Literature DB >> 33457750

Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae).

Nicholas Dunn1,2, Shaili Johri3,4, David Curnick1, Chris Carbone1, Elizabeth A Dinsdale4, Taylor K Chapple5, Barbara A Block3, Vincent Savolainen2.   

Abstract

We report the first mitochondrial genome sequences for the gray reef shark, Carcharhinus amblyrhynchos. Two specimens from the British Indian Ocean Territory were sequenced independently using two different next generation sequencing methods, namely short read sequencing on the Illumina HiSeq and long read sequencing on the Oxford Nanopore Technologies' MinION sequencer. The two sequences are 99.9% identical and are 16,705 base pairs (bp) and 16,706 bp in length. The mitogenome contains 22 tRNA genes, two rRNA genes, 13 protein-coding genes and two non-coding regions; the control region and the origin of light-strand replication (OL).
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  British Indian Ocean Territory; Carcharhinus amblyrhynchos; Shark; mitochondrial genome

Year:  2020        PMID: 33457750      PMCID: PMC7782339          DOI: 10.1080/23802359.2020.1765208

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  11 in total

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Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  Genetic structure and signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos).

Authors:  P Momigliano; R Harcourt; W D Robbins; V Jaiteh; G N Mahardika; A Sembiring; A Stow
Journal:  Heredity (Edinb)       Date:  2017-04-19       Impact factor: 3.821

3.  Reef sharks: recent advances in ecological understanding to inform conservation.

Authors:  G J Osgood; J K Baum
Journal:  J Fish Biol       Date:  2015-12       Impact factor: 2.051

4.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

5.  Connectivity in grey reef sharks (Carcharhinus amblyrhynchos) determined using empirical and simulated genetic data.

Authors:  Paolo Momigliano; Robert Harcourt; William D Robbins; Adam Stow
Journal:  Sci Rep       Date:  2015-08-28       Impact factor: 4.379

6.  MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

Authors:  Wataru Iwasaki; Tsukasa Fukunaga; Ryota Isagozawa; Koichiro Yamada; Yasunobu Maeda; Takashi P Satoh; Tetsuya Sado; Kohji Mabuchi; Hirohiko Takeshima; Masaki Miya; Mutsumi Nishida
Journal:  Mol Biol Evol       Date:  2013-08-16       Impact factor: 16.240

7.  Shark baselines and the conservation role of remote coral reef ecosystems.

Authors:  Francesco Ferretti; David Curnick; Keli Liu; Evgeny V Romanov; Barbara A Block
Journal:  Sci Adv       Date:  2018-03-07       Impact factor: 14.136

8.  ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.

Authors:  Shaun D Jackman; Benjamin P Vandervalk; Hamid Mohamadi; Justin Chu; Sarah Yeo; S Austin Hammond; Golnaz Jahesh; Hamza Khan; Lauren Coombe; Rene L Warren; Inanc Birol
Journal:  Genome Res       Date:  2017-02-23       Impact factor: 9.043

9.  'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.

Authors:  Shaili Johri; Jitesh Solanki; Vito Adrian Cantu; Sam R Fellows; Robert A Edwards; Isabel Moreno; Asit Vyas; Elizabeth A Dinsdale
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

10.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

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  3 in total

1.  The complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean.

Authors:  Ela Patel; Andrea M Bernard; Marissa Mehlrose; Sydney Harned; Kimberly A Finnegan; Cristín K Fitzpatrick; James S Lea; Mahmood S Shivji
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-07       Impact factor: 0.658

2.  Complete mitochondrial genome of the whitetip reef shark Triaenodon obesus from the British Indian Ocean Territory Marine Protected Area.

Authors:  Shaili Johri; Taylor K Chapple; Robert Schallert; Elizabeth A Dinsdale; Barbara A Block
Journal:  Mitochondrial DNA B Resour       Date:  2020-06-05       Impact factor: 0.658

3.  Characterization of the complete mitochondrial genome of blacktip shark Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae).

Authors:  Xiaolin Huang; Zanhu Zhou; Tinghe Lai; Binyuan He; Demin Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2022-02-15       Impact factor: 0.658

  3 in total

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