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Literature DB >> 33458061

The complete chloroplast genome of a Korean endemic species Sophora koreensis, Nakai.

Rahul Vasudeo Ramekar¹, Eun Ju Cheong², Hwa Lee², Kyong-Cheul Park¹, Myounghai Kwak³, Ik-Young Choi¹.

Abstract

In this study, we report the complete chloroplast (cp) genome of Sophora koreensis and its relation with other species within the Fabaceae family. The cp genome was 154,870 bp long, with a typical quadripartite structure including a pair of inverted repeat regions (25,866 bp) separated by a large (85,037 bp) and small (18,101 bp) single-copy (SC) region. The genome encodes a total of 84 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. Phylogenetic analysis suggested that S. koreensis is closely related to genus Sophora alopecuroides var. alopecuroides within Fabaceae.

Entities: Chemical Species

Keywords: Chloroplast genome; Sophora koreensis

Year: 2020 PMID： 33458061 PMCID： PMC7782127 DOI： 10.1080/23802359.2020.1797579

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

8 in total

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2. Automatic annotation of organellar genomes with DOGMA.

Authors: Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal: Bioinformatics Date: 2004-06-04 Impact factor: 6.937

3. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors: Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal: Mol Biol Evol Date: 2013-10-16 Impact factor: 16.240

4. Antimicrobial and cytotoxic activity of 18 prenylated flavonoids isolated from medicinal plants: Morus alba L., Morus mongolica Schneider, Broussnetia papyrifera (L.) Vent, Sophora flavescens Ait and Echinosophora koreensis Nakai.

Authors: H Y Sohn; K H Son; C S Kwon; G S Kwon; S S Kang
Journal: Phytomedicine Date: 2004-11 Impact factor: 5.340

5. Molecular evidence for the inclusion of the Korean endemic genus " Echinosophora" in Sophora (Fabaceae), and embryological features of the genus.

Authors: Won Kyung Lee; Toru Tokuoka; Kweon Heo
Journal: J Plant Res Date: 2004-04-09 Impact factor: 2.629

The complete chloroplast genome of a Korean endemic species Sophora koreensis, Nakai.

1. Artemis: sequence visualization and annotation.

2. Automatic annotation of organellar genomes with DOGMA.

3. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

4. Antimicrobial and cytotoxic activity of 18 prenylated flavonoids isolated from medicinal plants: Morus alba L., Morus mongolica Schneider, Broussnetia papyrifera (L.) Vent, Sophora flavescens Ait and Echinosophora koreensis Nakai.

5. Molecular evidence for the inclusion of the Korean endemic genus " Echinosophora" in Sophora (Fabaceae), and embryological features of the genus.

6. Four flavonoids from Echinosophora koreensis and their effects on alcohol metabolizing enzymes.

7. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

8. Trimmomatic: a flexible trimmer for Illumina sequence data.