Literature DB >> 33458034

Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia.

Puteri Nur Syahzanani Jahari1, Shahfiz Mohd Azman2, Kaviarasu Munian2, Nor Hazwani Ahmad Ruzman2, Mohd Shahir Shamsir3, Stine R Richter4, M Thomas P Gilbert4, Faezah Mohd Salleh1.   

Abstract

The mitogenome of a plantain squirrel, Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously published C. notatus mitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Callosciurus notatus; mitogenome; phylogenetic analysis

Year:  2020        PMID: 33458034      PMCID: PMC7782351          DOI: 10.1080/23802359.2020.1797583

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  Complete mitochondrial genome of the Pallas's squirrel Callosciurus erythraeus (Rodentia: Sciuridae).

Authors:  Lanlin Hu; Rui Peng; Fangdong Zou
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-10-16       Impact factor: 1.514

2.  An expanded mammal mitogenome dataset from Southeast Asia.

Authors:  Faezah Mohd Salleh; Jazmín Ramos-Madrigal; Fernando Peñaloza; Shanlin Liu; S Sinding Mikkel-Holger; P Patel Riddhi; Renata Martins; Dorina Lenz; Jörns Fickel; Christian Roos; Mohd Shahir Shamsir; Mohammad Shahfiz Azman; K Lim Burton; J Rossiter Stephen; Andreas Wilting; M Thomas P Gilbert
Journal:  Gigascience       Date:  2017-08-01       Impact factor: 6.524

3.  Asiatic Callosciurus squirrels as seed dispersers of exotic plants in the Pampas.

Authors:  S Yasmin Bobadilla; Verónica V Benitez; M Laura Guichón
Journal:  Curr Zool       Date:  2016-03-08       Impact factor: 2.624

4.  Diversity and composition of volant and non-volant small mammals in northern Selangor State Park and adjacent forest of Peninsular Malaysia.

Authors:  Kaviarasu Munian; Shahfiz Mohammad Azman; Norhazwani Ahmad Ruzman; Noor Faradiana Md Fauzi; Alwani Nur Zakaria
Journal:  Biodivers Data J       Date:  2020-04-07

5.  Examining the prey mass of terrestrial and aquatic carnivorous mammals: minimum, maximum and range.

Authors:  Marlee A Tucker; Tracey L Rogers
Journal:  PLoS One       Date:  2014-08-27       Impact factor: 3.240

6.  Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Authors:  Sarah Siu Tze Mak; Shyam Gopalakrishnan; Christian Carøe; Chunyu Geng; Shanlin Liu; Mikkel-Holger S Sinding; Lukas F K Kuderna; Wenwei Zhang; Shujin Fu; Filipe G Vieira; Mietje Germonpré; Hervé Bocherens; Sergey Fedorov; Bent Petersen; Thomas Sicheritz-Pontén; Tomas Marques-Bonet; Guojie Zhang; Hui Jiang; M Thomas P Gilbert
Journal:  Gigascience       Date:  2017-08-01       Impact factor: 6.524

  6 in total
  1 in total

1.  The first mitochondrial genome data of an old world fruit bat, Cynopterus sphinx from Malaysia.

Authors:  Puteri Nur Syahzanani Jahari; Shahfiz Mohd Azman; Kaviarasu Munian; Nur Alwani Zakaria; Mohd Shahir Shamsir Omar; Stine R Richter; Faezah Mohd Salleh
Journal:  Mitochondrial DNA B Resour       Date:  2021-01-12       Impact factor: 0.658

  1 in total

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