Literature DB >> 33457829

The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species.

Xia Liu1, Chong Sun1, Zheng Chen2, Xia Gong2.   

Abstract

Populus trinervis, which is a unique plant for China. The complete chloroplast genome sequence of Populus trinervis was characterized from Illumina pair-end sequencing. The chloroplast genome of P. trinervis was 156,415 bp in length, containing a large single-copy region (LSC) of 84,805 bp, a small single-copy region (SSC) of 16,505 bp, and two inverted repeat (IR) regions of 27,554 bp. The overall GC content is 36.70%, while the corresponding values of the LSC, SSC, and IR regions are 34.5, 30.5, and 42.0%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that P. trinervis and P. hopeiensis clustered together as sisters to other Populus species.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Populus trinervis; chloroplast genome; genetic information; phylogenetic analysis

Year:  2020        PMID: 33457829      PMCID: PMC7782331          DOI: 10.1080/23802359.2020.1775525

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  9 in total

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  9 in total

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