Literature DB >> 21245829

Forest tree genomics: growing resources and applications.

David B Neale1, Antoine Kremer.   

Abstract

Over the past two decades, research in forest tree genomics has lagged behind that of model and agricultural systems. However, genomic research in forest trees is poised to enter into an important and productive phase owing to the advent of next-generation sequencing technologies, the enormous genetic diversity in forest trees and the need to mitigate the effects of climate change. Research on long-lived woody perennials is extending our molecular knowledge of complex life histories and adaptations to the environment - enriching a field that has traditionally drawn biological inference from a few short-lived herbaceous species.

Mesh:

Year:  2011        PMID: 21245829     DOI: 10.1038/nrg2931

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  125 in total

1.  Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

Authors:  Andrew J Eckert; Andrew D Bower; Santiago C González-Martínez; Jill L Wegrzyn; Graham Coop; David B Neale
Journal:  Mol Ecol       Date:  2010-08-13       Impact factor: 6.185

2.  Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir.

Authors:  Konstantin V Krutovsky; David B Neale
Journal:  Genetics       Date:  2005-09-12       Impact factor: 4.562

3.  Selection on nuclear genes in a Pinus phylogeny.

Authors:  A E Palmé; T Pyhäjärvi; W Wachowiak; O Savolainen
Journal:  Mol Biol Evol       Date:  2009-01-23       Impact factor: 16.240

4.  Transcriptome analysis of bud burst in sessile oak (Quercus petraea).

Authors:  Jérémy Derory; Patrick Léger; Virginie Garcia; Jacques Schaeffer; Marie-Theres Hauser; Franck Salin; Christian Luschnig; Christophe Plomion; Josef Glössl; Antoine Kremer
Journal:  New Phytol       Date:  2006       Impact factor: 10.151

5.  Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.

Authors:  M T Cervera; V Storme; B Ivens; J Gusmão; B H Liu; V Hostyn; J Van Slycken; M Van Montagu; W Boerjan
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

Review 6.  A cytometric exercise in plant DNA histograms, with 2C values for 70 species.

Authors:  D Marie; S C Brown
Journal:  Biol Cell       Date:  1993       Impact factor: 4.458

7.  Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection.

Authors:  V Jorge; A Dowkiw; P Faivre-Rampant; C Bastien
Journal:  New Phytol       Date:  2005-07       Impact factor: 10.151

8.  The transcriptome of Populus in elevated CO2.

Authors:  Gail Taylor; Nathaniel R Street; Penny J Tricker; Andreas Sjödin; Laura Graham; Oskar Skogström; Carlo Calfapietra; Giuseppe Scarascia-Mugnozza; Stefan Jansson
Journal:  New Phytol       Date:  2005-07       Impact factor: 10.151

9.  Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).

Authors:  Andrew J Eckert; Jill L Wegrzyn; Barnaly Pande; Kathleen D Jermstad; Jennifer M Lee; John D Liechty; Brandon R Tearse; Konstantin V Krutovsky; David B Neale
Journal:  Genetics       Date:  2009-07-13       Impact factor: 4.562

10.  Overall alteration of circadian clock gene expression in the chestnut cold response.

Authors:  Cristian Ibañez; Alberto Ramos; Paloma Acebo; Angela Contreras; Rosa Casado; Isabel Allona; Cipriano Aragoncillo
Journal:  PLoS One       Date:  2008-10-29       Impact factor: 3.240

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  167 in total

1.  Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica.

Authors:  Etsuko Moritsuka; Yosuke Hisataka; Miho Tamura; Kentaro Uchiyama; Atsushi Watanabe; Yoshihiko Tsumura; Hidenori Tachida
Journal:  Genetics       Date:  2011-12-29       Impact factor: 4.562

2.  Biotechnology Towards Energy Crops.

Authors:  Theoni Margaritopoulou; Loukia Roka; Efi Alexopoulou; Myrsini Christou; Stamatis Rigas; Kosmas Haralampidis; Dimitra Milioni
Journal:  Mol Biotechnol       Date:  2016-03       Impact factor: 2.695

3.  Plantation forestry under global warming: hybrid poplars with improved thermotolerance provide new insights on the in vivo function of small heat shock protein chaperones.

Authors:  Irene Merino; Angela Contreras; Zhong-Ping Jing; Fernando Gallardo; Francisco M Cánovas; Luis Gómez
Journal:  Plant Physiol       Date:  2013-12-04       Impact factor: 8.340

4.  The evolutionary genetics of the genes underlying phenotypic associations for loblolly pine (Pinus taeda, Pinaceae).

Authors:  Andrew J Eckert; Jill L Wegrzyn; John D Liechty; Jennifer M Lee; W Patrick Cumbie; John M Davis; Barry Goldfarb; Carol A Loopstra; Sreenath R Palle; Tania Quesada; Charles H Langley; David B Neale
Journal:  Genetics       Date:  2013-10-11       Impact factor: 4.562

5.  Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression.

Authors:  Jean Beaulieu; Trevor Doerksen; Brian Boyle; Sébastien Clément; Marie Deslauriers; Stéphanie Beauseigle; Sylvie Blais; Pier-Luc Poulin; Patrick Lenz; Sébastien Caron; Philippe Rigault; Paul Bicho; Jean Bousquet; John Mackay
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

Review 6.  Plant exomics: concepts, applications and methodologies in crop improvement.

Authors:  Uzair Hashmi; Samia Shafqat; Faria Khan; Misbah Majid; Harris Hussain; Alvina Gul Kazi; Riffat John; Parvaiz Ahmad
Journal:  Plant Signal Behav       Date:  2015

7.  A white spruce gene catalog for conifer genome analyses.

Authors:  Philippe Rigault; Brian Boyle; Pierre Lepage; Janice E K Cooke; Jean Bousquet; John J MacKay
Journal:  Plant Physiol       Date:  2011-07-05       Impact factor: 8.340

8.  Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica.

Authors:  Y Tsumura; K Uchiyama; Y Moriguchi; S Ueno; T Ihara-Ujino
Journal:  Heredity (Edinb)       Date:  2012-08-29       Impact factor: 3.821

Review 9.  Towards decoding the conifer giga-genome.

Authors:  John Mackay; Jeffrey F D Dean; Christophe Plomion; Daniel G Peterson; Francisco M Cánovas; Nathalie Pavy; Pär K Ingvarsson; Outi Savolainen; M Ángeles Guevara; Silvia Fluch; Barbara Vinceti; Dolores Abarca; Carmen Díaz-Sala; María-Teresa Cervera
Journal:  Plant Mol Biol       Date:  2012-09-09       Impact factor: 4.076

10.  Association of allelic variation in PtoXET16A with growth and wood properties in Populus tomentosa.

Authors:  Bowen Wang; Deqiang Zhang
Journal:  Int J Mol Sci       Date:  2014-09-23       Impact factor: 5.923

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