Literature DB >> 33457786

Complete mitochondrial genome of the whitetip reef shark Triaenodon obesus from the British Indian Ocean Territory Marine Protected Area.

Shaili Johri1,2, Taylor K Chapple1,3, Robert Schallert1, Elizabeth A Dinsdale2, Barbara A Block1.   

Abstract

We present the first mitochondrial genome of Trianenodon obesus from the Chagos Archipelago in the British Indian Ocean Territory (BIOT) Marine Protected Area. The mitogenome was 16,702 bp in length and consisted of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a non-coding control region (D-loop). GC content was at 38.9%. The control region was 1064 bp in length. This mitogenome for the BIOT MPA T. obesus differed from the previously published T. obesus genome by 15 bp and the differences include a 2 bp insertion and 13 single nucleotide polymorphisms distributed across the mitogenome in the BIOT MPA sequence. Whole mitogenome sequence of T. obesus from the Chagos archipelago presented here fills existing gaps in genetic information on marine species from the BIOT MPA and provides additional tools for species specific assessments as to the effectiveness of MPA management. In addition, methods presented here lay the framework for genetic studies in remote locations with limited infrastructure.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  BIOT; Chagos; Genomics; MPA; conservation; whitetip reef shark

Year:  2020        PMID: 33457786      PMCID: PMC7783066          DOI: 10.1080/23802359.2020.1775148

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

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Authors:  D Ojala; J Montoya; G Attardi
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

2.  Complete mitochondrial genome of the whitetip reef shark Triaenodon obesus (Carcharhiniformes: Carcharhinidae).

Authors:  Xiao Chen; Pichai Sonchaeng; Vasin Yuvanatemiya; Bunlung Nuangsaeng; Weiming Ai
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3.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

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Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

4.  Shark baselines and the conservation role of remote coral reef ecosystems.

Authors:  Francesco Ferretti; David Curnick; Keli Liu; Evgeny V Romanov; Barbara A Block
Journal:  Sci Adv       Date:  2018-03-07       Impact factor: 14.136

5.  'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.

Authors:  Shaili Johri; Jitesh Solanki; Vito Adrian Cantu; Sam R Fellows; Robert A Edwards; Isabel Moreno; Asit Vyas; Elizabeth A Dinsdale
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6.  Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae).

Authors:  Nicholas Dunn; Shaili Johri; David Curnick; Chris Carbone; Elizabeth A Dinsdale; Taylor K Chapple; Barbara A Block; Vincent Savolainen
Journal:  Mitochondrial DNA B Resour       Date:  2020-05-14       Impact factor: 0.658

7.  Mitochondrial genome of the Smoothnose wedgefish Rhynchobatus laevis from the Western Indian Ocean.

Authors:  Shaili Johri; Anjani Tiwari; Emma N Kerr; Elizabeth A Dinsdale
Journal:  Mitochondrial DNA B Resour       Date:  2020-05-14       Impact factor: 0.658

8.  Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory.

Authors:  Shaili Johri; Nicholas Dunn; Taylor K Chapple; David Curnick; Vincent Savolainen; Elizabeth A Dinsdale; Barbara A Block
Journal:  Mitochondrial DNA B Resour       Date:  2020-05-14       Impact factor: 0.658

  8 in total

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