Literature DB >> 33457752

Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory.

Shaili Johri1,2, Nicholas Dunn3,4, Taylor K Chapple5, David Curnick3, Vincent Savolainen4, Elizabeth A Dinsdale2, Barbara A Block1.   

Abstract

The Chagos archipelago in the British Indian Ocean Territory (BIOT) has been lacking in detailed genetic studies of its chondrichthyan populations. Chondrichthyes in Chagos continue to be endangered through illegal fishing operations, necessitating species distribution and abundance studies to facilitate urgent monitoring and conservation of the species. Here, we present a complete mitochondrial genome of the Silvertip Shark, Carcharhinus albimarginatus sampled in the Chagos archipelago. The mitochondrial genome of C. albimarginatus was 16,706 bp in length and consisted of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, a replication origin and a D-loop region. GC content was at 38.7% and the control region was 1,065 bp in length. We expect that mitogenomes presented here will aid development of molecular assays for species distribution studies. Overall these studies will promote effective conservation of marine ecosystemes in the BIOT.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chagos; MPA; MinION; conservation; ecosystems; molecular taxonomy; sharks

Year:  2020        PMID: 33457752      PMCID: PMC7782225          DOI: 10.1080/23802359.2020.1765210

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  5 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

4.  Shark baselines and the conservation role of remote coral reef ecosystems.

Authors:  Francesco Ferretti; David Curnick; Keli Liu; Evgeny V Romanov; Barbara A Block
Journal:  Sci Adv       Date:  2018-03-07       Impact factor: 14.136

5.  'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.

Authors:  Shaili Johri; Jitesh Solanki; Vito Adrian Cantu; Sam R Fellows; Robert A Edwards; Isabel Moreno; Asit Vyas; Elizabeth A Dinsdale
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

  5 in total
  2 in total

1.  Complete mitochondrial genome of the whitetip reef shark Triaenodon obesus from the British Indian Ocean Territory Marine Protected Area.

Authors:  Shaili Johri; Taylor K Chapple; Robert Schallert; Elizabeth A Dinsdale; Barbara A Block
Journal:  Mitochondrial DNA B Resour       Date:  2020-06-05       Impact factor: 0.658

2.  Characterization of the complete mitochondrial genome of blacktip shark Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae).

Authors:  Xiaolin Huang; Zanhu Zhou; Tinghe Lai; Binyuan He; Demin Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2022-02-15       Impact factor: 0.658

  2 in total

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