Literature DB >> 33457768

The complete mitochondrial DNA sequence of Yimeng black goat (Capra hircus) and its potential application in mutton discrimination.

Ke Liu1,2, Ying Jin3, Feng-Yan Zhang4, Yan-Zhen Zhang1,2, Xian-Qing Quan2, Qing-Dian Han2, Ling-Xiao Liu5, Yun-Guo Liu2, Shen-Jin Lv2, Xiao-Ming Qu6.   

Abstract

Yimeng black goat is one of the national breeds of geographical indication in China and is one of the key protected local livestock and poultry breeds of Shandong province. The complete mitochondrial genome sequence of Yimeng black goat was investigated in this study (GenBank accession no. MT134111). The mitogenome (16,640 bp) consisted of a non-coding control region (D-loop region), two ribosomal RNA (rRNA) genes, 13 protein-coding genes (PCGs), and 22 transfer RNA (tRNA) genes. The complete mitochondrial genome sequence and the neighbour-joining tree of the Yimeng black goat would contribute to further study in genetic mechanism and phylogenomic research of goats.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Capra hircus; Yimeng black goat; mitochondrial genome

Year:  2020        PMID: 33457768      PMCID: PMC7782185          DOI: 10.1080/23802359.2020.1773337

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  16 in total

1.  A complete mitochondrial genome of Dazu Black goat.

Authors:  Guang-Xin E; Yong-Fu Huang; Hui-Jiang Gao; Zhong-Quan Zhao; Cao-De Jiang; Jia-Hua Zhang; Yue-Hui Ma; Li-Peng Chen; Yan Zeng; Ya-Wang Sun; Yong-Ju Zhao
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-03-03       Impact factor: 1.514

2.  tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Methods Mol Biol       Date:  2019

3.  Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes.

Authors:  N T Perna; T D Kocher
Journal:  J Mol Evol       Date:  1995-09       Impact factor: 2.395

4.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

5.  The complete nucleotide sequence of goat (Capra hircus) mitochondrial genome. Goat mitochondrial genome.

Authors:  Pietro Parma; Parma Pietro; Maria Feligini; Feligini Maria; Gianfranco Greeppi; Greppi Gianfranco; Giuseppe Enne; Enne Giuseppe
Journal:  DNA Seq       Date:  2003-06

6.  The complete mitochondrial genome of Leizhou goat Capra hircus (Bovidae; Caprinae).

Authors:  Li-Qun Sun; Gong-Liang Guo; Jin-Yi Wu; Lei Zhang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-07-31       Impact factor: 1.514

7.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

8.  The complete mitochondrial genome of Yunnan black goat (Capra hircus).

Authors:  Yan-Xia Tang; Fang Liu; Hong-Xia Tang; Shao-Kun Yang; Xiao-Yan Zhang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-02-04       Impact factor: 1.514

9.  Complete mitochondrial genome of the Liuyang black goat and its phylogenetic relationship with other Caprinae.

Authors:  S Chen; H M Ma; G S Chen; L Y Wang
Journal:  Genet Mol Res       Date:  2016-07-14

10.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

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  1 in total

1.  Identification and Characterization of lncRNAs Expression Profile Related to Goat Skeletal Muscle at Different Development Stages.

Authors:  Haiyin Han; Xianwei Wang; Wentao Li; Jiannan Liu; Yekai Fan; Hui Zhang; Junqi Yang; Yahui Gao; Yufang Liu
Journal:  Animals (Basel)       Date:  2022-10-06       Impact factor: 3.231

  1 in total

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