Literature DB >> 33456298

Augmenting Colonoscopy using Extended and Directional CycleGAN for Lossy Image Translation.

Shawn Mathew1, Saad Nadeem2, Sruti Kumari1, Arie Kaufman1.   

Abstract

Colorectal cancer screening modalities, such as optical colonoscopy (OC) and virtual colonoscopy (VC), are critical for diagnosing and ultimately removing polyps (precursors of colon cancer). The non-invasive VC is normally used to inspect a 3D reconstructed colon (from CT scans) for polyps and if found, the OC procedure is performed to physically traverse the colon via endoscope and remove these polyps. In this paper, we present a deep learning framework, Extended and Directional CycleGAN, for lossy unpaired image-to-image translation between OC and VC to augment OC video sequences with scale-consistent depth information from VC, and augment VC with patient-specific textures, color and specular highlights from OC (e.g, for realistic polyp synthesis). Both OC and VC contain structural information, but it is obscured in OC by additional patient-specific texture and specular highlights, hence making the translation from OC to VC lossy. The existing CycleGAN approaches do not handle lossy transformations. To address this shortcoming, we introduce an extended cycle consistency loss, which compares the geometric structures from OC in the VC domain. This loss removes the need for the CycleGAN to embed OC information in the VC domain. To handle a stronger removal of the textures and lighting, a Directional Discriminator is introduced to differentiate the direction of translation (by creating paired information for the discriminator), as opposed to the standard CycleGAN which is direction-agnostic. Combining the extended cycle consistency loss and the Directional Discriminator, we show state-of-the-art results on scale-consistent depth inference for phantom, textured VC and for real polyp and normal colon video sequences. We also present results for realistic pendunculated and flat polyp synthesis from bumps introduced in 3D VC models.

Entities:  

Year:  2020        PMID: 33456298      PMCID: PMC7811175          DOI: 10.1109/cvpr42600.2020.00475

Source DB:  PubMed          Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit        ISSN: 1063-6919


  6 in total

1.  Unsupervised Reverse Domain Adaptation for Synthetic Medical Images via Adversarial Training.

Authors:  Faisal Mahmood; Richard Chen; Nicholas J Durr
Journal:  IEEE Trans Med Imaging       Date:  2018-06-01       Impact factor: 10.048

2.  Computer-Aided Classification of Gastrointestinal Lesions in Regular Colonoscopy.

Authors:  Pablo Mesejo; Daniel Pizarro; Armand Abergel; Olivier Rouquette; Sylvain Beorchia; Laurent Poincloux; Adrien Bartoli
Journal:  IEEE Trans Med Imaging       Date:  2016-09       Impact factor: 10.048

3.  SurfelMeshing: Online Surfel-Based Mesh Reconstruction.

Authors:  Thomas Schops; Torsten Sattler; Marc Pollefeys
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2019-10-14       Impact factor: 6.226

Review 4.  Colorectal Cancer Screening: Recommendations for Physicians and Patients from the U.S. Multi-Society Task Force on Colorectal Cancer.

Authors:  Douglas K Rex; C Richard Boland; Jason A Dominitz; Francis M Giardiello; David A Johnson; Tonya Kaltenbach; Theodore R Levin; David Lieberman; Douglas J Robertson
Journal:  Am J Gastroenterol       Date:  2017-06-06       Impact factor: 10.864

5.  Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.

Authors:  Freddie Bray; Jacques Ferlay; Isabelle Soerjomataram; Rebecca L Siegel; Lindsey A Torre; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2018-09-12       Impact factor: 508.702

6.  Implicit domain adaptation with conditional generative adversarial networks for depth prediction in endoscopy.

Authors:  Anita Rau; P J Eddie Edwards; Omer F Ahmad; Paul Riordan; Mirek Janatka; Laurence B Lovat; Danail Stoyanov
Journal:  Int J Comput Assist Radiol Surg       Date:  2019-04-15       Impact factor: 2.924

  6 in total
  6 in total

1.  CLTS-GAN: Color-Lighting-Texture-Specular Reflection Augmentation for Colonoscopy.

Authors:  Shawn Mathew; Saad Nadeem; Arie Kaufman
Journal:  Med Image Comput Comput Assist Interv       Date:  2022-09-17

2.  FoldIt: Haustral Folds Detection and Segmentation in Colonoscopy Videos.

Authors:  Shawn Mathew; Saad Nadeem; Arie Kaufman
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21

3.  Colonoscopy polyp detection and classification: Dataset creation and comparative evaluations.

Authors:  Kaidong Li; Mohammad I Fathan; Krushi Patel; Tianxiao Zhang; Cuncong Zhong; Ajay Bansal; Amit Rastogi; Jean S Wang; Guanghui Wang
Journal:  PLoS One       Date:  2021-08-17       Impact factor: 3.240

4.  RNNSLAM: Reconstructing the 3D colon to visualize missing regions during a colonoscopy.

Authors:  Ruibin Ma; Rui Wang; Yubo Zhang; Stephen Pizer; Sarah K McGill; Julian Rosenman; Jan-Michael Frahm
Journal:  Med Image Anal       Date:  2021-05-19       Impact factor: 13.828

5.  Colonoscopic image synthesis with generative adversarial network for enhanced detection of sessile serrated lesions using convolutional neural network.

Authors:  Dan Yoon; Hyoun-Joong Kong; Byeong Soo Kim; Woo Sang Cho; Jung Chan Lee; Minwoo Cho; Min Hyuk Lim; Sun Young Yang; Seon Hee Lim; Jooyoung Lee; Ji Hyun Song; Goh Eun Chung; Ji Min Choi; Hae Yeon Kang; Jung Ho Bae; Sungwan Kim
Journal:  Sci Rep       Date:  2022-01-07       Impact factor: 4.379

6.  Stomach 3D Reconstruction Using Virtual Chromoendoscopic Images.

Authors:  Aji Resindra Widya; Yusuke Monno; Masatoshi Okutomi; Sho Suzuki; Takuji Gotoda; Kenji Miki
Journal:  IEEE J Transl Eng Health Med       Date:  2021-02-24       Impact factor: 3.316

  6 in total

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