Literature DB >> 33445415

Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.

Olga Kyrchanova1, Pavel Georgiev1.   

Abstract

In higher eukaryotes, enhancers determine the activation of developmental gene transcription in specific cell types and stages of embryogenesis. Enhancers transform the signals produced by various transcription factors within a given cell, activating the transcription of the targeted genes. Often, developmental genes can be associated with dozens of enhancers, some of which are located at large distances from the promoters that they regulate. Currently, the mechanisms underlying specific distance interactions between enhancers and promoters remain poorly understood. This review briefly describes the properties of enhancers and discusses the mechanisms of distance interactions and potential proteins involved in this process.

Entities:  

Keywords:  C2H2 proteins; CTCF; LDB1; chromatin insulator; long-distance interactions

Mesh:

Substances:

Year:  2021        PMID: 33445415      PMCID: PMC7828040          DOI: 10.3390/ijms22020671

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  191 in total

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Authors:  O V Kyrchanova; P G Georgiev
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2.  Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex.

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Journal:  Mol Cell Biol       Date:  2015-08-24       Impact factor: 4.272

Review 3.  The Many Roles of Cohesin in Drosophila Gene Transcription.

Authors:  Dale Dorsett
Journal:  Trends Genet       Date:  2019-05-23       Impact factor: 11.639

Review 4.  Transcription regulation by the Mediator complex.

Authors:  Julie Soutourina
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-06       Impact factor: 94.444

5.  Uncoupling histone H3K4 trimethylation from developmental gene expression via an equilibrium of COMPASS, Polycomb and DNA methylation.

Authors:  Delphine Douillet; Christie C Sze; Caila Ryan; Andrea Piunti; Avani P Shah; Michal Ugarenko; Stacy A Marshall; Emily J Rendleman; Didi Zha; Kathryn A Helmin; Zibo Zhao; Kaixiang Cao; Marc A Morgan; Benjamin D Singer; Elizabeth T Bartom; Edwin R Smith; Ali Shilatifard
Journal:  Nat Genet       Date:  2020-05-11       Impact factor: 38.330

6.  Genetic dissection of the α-globin super-enhancer in vivo.

Authors:  Christian Babbs; James O J Davies; Bryony J Graham; Lars Hanssen; Mira T Kassouf; A Marieke Marieke Oudelaar; Jacqueline A Sharpe; Maria C Suciu; Jelena Telenius; Ruth Williams; Deborah Hay; Jim R Hughes; Christina Rode; Pik-Shan Li; Len A Pennacchio; Jacqueline A Sloane-Stanley; Helena Ayyub; Sue Butler; Tatjana Sauka-Spengler; Richard J Gibbons; Andrew J H Smith; William G Wood; Douglas R Higgs
Journal:  Nat Genet       Date:  2016-07-04       Impact factor: 38.330

7.  YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment.

Authors:  Jonathan A Beagan; Michael T Duong; Katelyn R Titus; Linda Zhou; Zhendong Cao; Jingjing Ma; Caroline V Lachanski; Daniel R Gillis; Jennifer E Phillips-Cremins
Journal:  Genome Res       Date:  2017-05-23       Impact factor: 9.043

8.  Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila.

Authors:  Michelle Pherson; Ziva Misulovin; Maria Gause; Dale Dorsett
Journal:  Genome Res       Date:  2019-02-22       Impact factor: 9.043

9.  An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion.

Authors:  Kizhakke Mattada Sathyan; Brian D McKenna; Warren D Anderson; Fabiana M Duarte; Leighton Core; Michael J Guertin
Journal:  Genes Dev       Date:  2019-08-29       Impact factor: 11.361

Review 10.  Recent evidence that TADs and chromatin loops are dynamic structures.

Authors:  Anders S Hansen; Claudia Cattoglio; Xavier Darzacq; Robert Tjian
Journal:  Nucleus       Date:  2017-12-14       Impact factor: 4.197

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  7 in total

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Authors:  Andrea Ortega-Yáñez; Samantha Cruz-Ruiz; Martha Vázquez; Mario Zurita
Journal:  Sci Rep       Date:  2022-07-09       Impact factor: 4.996

2.  Analysis of the landscape of human enhancer sequences in biological databases.

Authors:  Juan Mulero Hernández; Jesualdo Tomás Fernández-Breis
Journal:  Comput Struct Biotechnol J       Date:  2022-05-30       Impact factor: 6.155

3.  Mapping of functional elements of the Fab-6 boundary involved in the regulation of the Abd-B hox gene in Drosophila melanogaster.

Authors:  Nikolay Postika; Paul Schedl; Pavel Georgiev; Olga Kyrchanova
Journal:  Sci Rep       Date:  2021-02-18       Impact factor: 4.379

4.  Mechanisms of CP190 Interaction with Architectural Proteins in Drosophila Melanogaster.

Authors:  Marat Sabirov; Anastasia Popovich; Konstantin Boyko; Alena Nikolaeva; Olga Kyrchanova; Oksana Maksimenko; Vladimir Popov; Pavel Georgiev; Artem Bonchuk
Journal:  Int J Mol Sci       Date:  2021-11-17       Impact factor: 5.923

5.  Dimerization Activity of a Disordered N-Terminal Domain from Drosophila CLAMP Protein.

Authors:  Evgeniya Tikhonova; Sofia Mariasina; Olga Arkova; Oksana Maksimenko; Pavel Georgiev; Artem Bonchuk
Journal:  Int J Mol Sci       Date:  2022-03-31       Impact factor: 5.923

6.  Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in Drosophila.

Authors:  Yulii V Shidlovskii; Oleg V Bylino; Alexander V Shaposhnikov; Zaur M Kachaev; Lyubov A Lebedeva; Valeria V Kolesnik; Diego Amendola; Giovanna De Simone; Nadia Formicola; Paul Schedl; Filomena Anna Digilio; Ennio Giordano
Journal:  Int J Mol Sci       Date:  2021-03-11       Impact factor: 5.923

7.  Fragments of the Fab-3 and Fab-4 Boundaries of the Drosophila melanogaster Bithorax Complex That Include CTCF Sites Are not Effective Insulators.

Authors:  O V Kyrchanova; N Y Postika; V V Sokolov; P G Georgiev
Journal:  Dokl Biochem Biophys       Date:  2022-03-11       Impact factor: 0.788

  7 in total

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