Literature DB >> 33799739

Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in Drosophila.

Yulii V Shidlovskii1,2,3, Oleg V Bylino1, Alexander V Shaposhnikov1, Zaur M Kachaev1,2, Lyubov A Lebedeva1, Valeria V Kolesnik1, Diego Amendola4, Giovanna De Simone4,5, Nadia Formicola6,7, Paul Schedl1,8, Filomena Anna Digilio6, Ennio Giordano4.   

Abstract

The chromatin remodeler SWI/SNF is an important participant in gene activation, functioning predominantly by opening the chromatin structure on promoters and enhancers. Here, we describe its novel mode of action in which SWI/SNF factors mediate the targeted action of an enhancer. We studied the functions of two signature subunits of PBAP subfamily, BAP170 and SAYP, in Drosophila. These subunits were stably tethered to a transgene reporter carrying the hsp70 core promoter. The tethered subunits mediate transcription of the reporter in a pattern that is generated by enhancers close to the insertion site in multiple loci throughout the genome. Both tethered SAYP and BAP170 recruit the whole PBAP complex to the reporter promoter. However, we found that BAP170-dependent transcription is more resistant to the depletion of other PBAP subunits, suggesting that BAP170 may play a more critical role in establishing enhancer-dependent transcription.

Entities:  

Keywords:  PBAP; SWI/SNF; chromatin remodeling; enhancer; promoter

Mesh:

Substances:

Year:  2021        PMID: 33799739      PMCID: PMC7999800          DOI: 10.3390/ijms22062856

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  90 in total

1.  Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters.

Authors:  Michael Y Tolstorukov; Courtney G Sansam; Ping Lu; Edward C Koellhoffer; Katherine C Helming; Burak H Alver; Erik J Tillman; Julia A Evans; Boris G Wilson; Peter J Park; Charles W M Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-30       Impact factor: 11.205

Review 2.  Architectural proteins, transcription, and the three-dimensional organization of the genome.

Authors:  Caelin Cubeñas-Potts; Victor G Corces
Journal:  FEBS Lett       Date:  2015-05-22       Impact factor: 4.124

Review 3.  Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes.

Authors:  Lisette Mohrmann; C Peter Verrijzer
Journal:  Biochim Biophys Acta       Date:  2004-11-23

4.  Olig2 targets chromatin remodelers to enhancers to initiate oligodendrocyte differentiation.

Authors:  Yang Yu; Ying Chen; Bongwoo Kim; Haibo Wang; Chuntao Zhao; Xuelian He; Lei Liu; Wei Liu; Lai Man N Wu; Meng Mao; Jonah R Chan; Jiang Wu; Q Richard Lu
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

5.  Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure.

Authors:  J N Hirschhorn; S A Brown; C D Clark; F Winston
Journal:  Genes Dev       Date:  1992-12       Impact factor: 11.361

6.  Osa, a subunit of the BAP chromatin-remodelling complex, participates in the regulation of gene expression in response to EGFR signalling in the Drosophila wing.

Authors:  Ana Terriente-Félix; Jose F de Celis
Journal:  Dev Biol       Date:  2009-03-21       Impact factor: 3.582

Review 7.  The punctilious RNA polymerase II core promoter.

Authors:  Long Vo Ngoc; Yuan-Liang Wang; George A Kassavetis; James T Kadonaga
Journal:  Genes Dev       Date:  2017-07-01       Impact factor: 11.361

8.  ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.

Authors:  Radhika Mathur; Burak H Alver; Adrianna K San Roman; Boris G Wilson; Xiaofeng Wang; Agoston T Agoston; Peter J Park; Ramesh A Shivdasani; Charles W M Roberts
Journal:  Nat Genet       Date:  2016-12-12       Impact factor: 38.330

9.  SWI/SNF regulates half of its targets without the need of ATP-driven nucleosome remodeling by Brahma.

Authors:  Antonio Jordán-Pla; Simei Yu; Johan Waldholm; Thomas Källman; Ann-Kristin Östlund Farrants; Neus Visa
Journal:  BMC Genomics       Date:  2018-05-18       Impact factor: 3.969

10.  SWI/SNF Infobase-An exclusive information portal for SWI/SNF remodeling complex subunits.

Authors:  Udayakumar Mani; Alagu Sankareswaran S; Arun Goutham R N; Suma Mohan S
Journal:  PLoS One       Date:  2017-09-29       Impact factor: 3.240

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  3 in total

1.  Chromatin Molecular Complexes-Functional Organization, Protection and Regulation of the Genome.

Authors:  Ctirad Hofr
Journal:  Int J Mol Sci       Date:  2022-07-07       Impact factor: 6.208

2.  Application of the 3C Method to Study the Developmental Genes in Drosophila Larvae.

Authors:  Oleg V Bylino; Airat N Ibragimov; Filomena Anna Digilio; Ennio Giordano; Yulii V Shidlovskii
Journal:  Front Genet       Date:  2022-07-15       Impact factor: 4.772

3.  NODULIN HOMEOBOX is required for heterochromatin homeostasis in Arabidopsis.

Authors:  Zsolt Karányi; Ágnes Mosolygó-L; Orsolya Feró; Adrienn Horváth; Beáta Boros-Oláh; Éva Nagy; Szabolcs Hetey; Imre Holb; Henrik Mihály Szaker; Márton Miskei; Tibor Csorba; Lóránt Székvölgyi
Journal:  Nat Commun       Date:  2022-08-27       Impact factor: 17.694

  3 in total

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