Literature DB >> 33440718

Genetic Variations in Prostaglandin E2 Pathway Identified as Susceptibility Biomarkers for Gastric Cancer in an Intermediate Risk European Country.

Catarina Lopes1, Carina Pereira1,2, Mónica Farinha3, Rui Medeiros1,4, Mário Dinis-Ribeiro2,5.   

Abstract

The cyclooxygenase-2 (COX-2)/prostaglandin E2 (PGE2) pathway exerts deleterious pleiotropic effects in inflammation-induced gastric carcinogenesis. We aimed to assess the association of genetic variants in prostaglandin-endoperoxide synthase 2 (PTGS2), ATP binding cassette subfamily C member 4 (ABCC4), hydroxyprostaglandin dehydrogenase 15-(NAD) (HPGD), and solute carrier organic anion transporter family member 2A1 (SLCO2A1) PGE2 pathway-related genes with gastric cancer (GC) risk in a European Caucasian population. A hospital-based case-control study gathering 260 GC cases and 476 cancer-free controls was implemented. Using a tagSNP approach, 51 single nucleotide polymorphisms (SNPs) were genotyped through MassARRAY® iPLEX Gold Technology or allelic discrimination by real-time polymerase chain reaction (PCR). Homozygous carriers of the minor allele for both rs689466 and rs10935090 SNPs were associated with a 2.98 and 4.30-fold increased risk for GC, respectively (95% confidence interval (CI): 1.14-7.74, p = 0.027; 95% CI: 1.22-15.16, p = 0.026), with the latter also being associated with an anticipated diagnosis age. A multifactor dimensionality reduction analysis identified an overall three-factor best interactive model composed of age, rs689466, and rs1678374 that was associated with a 17.6-fold GC increased risk (95% CI: 11.67-26.48, p < 0.0001, (cross-validation) CV consistency of 8/10 and accuracy of 0.807). In this preliminary study, several tagSNPs in PGE2 pathway-related genes were identified as risk biomarkers for GC development. This approach may help to identify higher-risk individuals and may contribute to the tailoring screening of GC in intermediate-risk European countries.

Entities:  

Keywords:  ATP binding cassette subfamily C member 4; gastric cancer; genetic susceptibility; hydroxyprostaglandin dehydrogenase 15-(NAD); prostaglandin E2; prostaglandin-endoperoxide synthase 2; solute carrier organic anion transporter family member 2A1

Mesh:

Substances:

Year:  2021        PMID: 33440718      PMCID: PMC7827533          DOI: 10.3390/ijms22020648

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  49 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

Review 2.  Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes.

Authors:  Gloria Ribas; Anna González-Neira; Antonio Salas; Roger L Milne; Ana Vega; Begoña Carracedo; Emilio González; Eva Barroso; Lara P Fernández; Patricio Yankilevich; Mercedes Robledo; Angel Carracedo; Javier Benítez
Journal:  Hum Genet       Date:  2005-12-02       Impact factor: 4.132

3.  Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations.

Authors:  Sheng Gu; Andrew J Pakstis; Hui Li; William C Speed; Judith R Kidd; Kenneth K Kidd
Journal:  Eur J Hum Genet       Date:  2007-01-03       Impact factor: 4.246

4.  Detection and Clinical Significance of COX-2 Gene SNPs in Gastric Cancer.

Authors:  Xingre Lu; Fengyu Chen; Xiaowen Liu; Diao Yuan; Yunju Zi; Xiang He; Running He
Journal:  Cell Biochem Biophys       Date:  2015-07       Impact factor: 2.194

5.  COX-2 is associated with proliferation and apoptosis markers and serves as an independent prognostic factor in gastric cancer.

Authors:  Johanna Mrena; Jan-Patrik Wiksten; Arto Kokkola; Stig Nordling; Ari Ristimäki; Caj Haglund
Journal:  Tumour Biol       Date:  2009-12-18

Review 6.  Genetic variation and gastric cancer risk: a field synopsis and meta-analysis.

Authors:  Simone Mocellin; Daunia Verdi; Karen A Pooley; Donato Nitti
Journal:  Gut       Date:  2015-03-02       Impact factor: 23.059

Review 7.  Eicosanoids and cancer.

Authors:  Dingzhi Wang; Raymond N Dubois
Journal:  Nat Rev Cancer       Date:  2010-02-19       Impact factor: 60.716

8.  Polymorphisms in fatty-acid-metabolism-related genes are associated with colorectal cancer risk.

Authors:  Birgit Hoeft; Jakob Linseisen; Lars Beckmann; Karin Müller-Decker; Federico Canzian; Anika Hüsing; Rudolf Kaaks; Ulla Vogel; Marianne U Jakobsen; Kim Overvad; Rikke D Hansen; Sven Knüppel; Heiner Boeing; Antonia Trichopoulou; Yvoni Koumantaki; Dimitrios Trichopoulos; Franco Berrino; Domenico Palli; Salvatore Panico; Rosario Tumino; H B Bueno-de-Mesquita; Fränzel J B van Duijnhoven; Carla H van Gils; Petra H Peeters; Vanessa Dumeaux; Eiliv Lund; José M Huerta Castaño; Xavier Muñoz; Laudina Rodriguez; Aurelio Barricarte; Jonas Manjer; Karin Jirström; Bethany Van Guelpen; Göran Hallmans; Elizabeth A Spencer; Francesca L Crowe; Kay-Tee Khaw; Nick Wareham; Sophie Morois; Marie-Christine Boutron-Ruault; Françoise Clavel-Chapelon; Veronique Chajes; Mazda Jenab; Paolo Boffetta; Paolo Vineis; Traci Mouw; Teresa Norat; Elio Riboli; Alexandra Nieters
Journal:  Carcinogenesis       Date:  2009-12-30       Impact factor: 4.944

9.  Cyclooxygenase-2 -1195G>A (rs689466) polymorphism and cancer susceptibility: an updated meta-analysis involving 50,672 subjects.

Authors:  Yafeng Wang; Heping Jiang; Tianyun Liu; Weifeng Tang; Zhiqiang Ma
Journal:  Int J Clin Exp Med       Date:  2015-08-15

10.  Human genetic variation recognizes functional elements in noncoding sequence.

Authors:  David Lomelin; Eric Jorgenson; Neil Risch
Journal:  Genome Res       Date:  2009-12-23       Impact factor: 9.043

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