Literature DB >> 33437534

Ångström- and Nano-scale Pore-Based Nucleic Acid Sequencing of Current and Emergent Pathogens.

Britney A Shepherd1, Md Rubayat-E Tanjil2, Yunjo Jeong2, Bilgenur Baloğlu3, Jingqiu Liao4, Michael Cai Wang1,2.   

Abstract

State-of-the-art nanopore sequencing enables rapid and real-time identification of novel pathogens, which has wide application in various research areas and is an emerging diagnostic tool for infectious diseases including COVID-19. Nanopore translocation enables de novo sequencing with long reads (> 10 kb) of novel genomes, which has advantages over existing short-read sequencing technologies. Biological nanopore sequencing has already achieved success as a technology platform but it is sensitive to empirical factors such as pH and temperature. Alternatively, ångström- and nano-scale solid-state nanopores, especially those based on two-dimensional (2D) membranes, are promising next-generation technologies as they can surpass biological nanopores in the variety of membrane materials, ease of defining pore morphology, higher nucleotide detection sensitivity, and facilitation of novel and hybrid sequencing modalities. Since the discovery of graphene, atomically-thin 2D materials have shown immense potential for the fabrication of nanopores with well-defined geometry, rendering them viable candidates for nanopore sequencing membranes. Here, we review recent progress and future development trends of 2D materials and their ångström- and nano-scale pore-based nucleic acid (NA) sequencing including fabrication techniques and current and emerging sequencing modalities. In addition, we discuss the current challenges of translocation-based nanopore sequencing and provide an outlook on promising future research directions. © The Materials Research Society 2020.

Entities:  

Year:  2020        PMID: 33437534      PMCID: PMC7790041          DOI: 10.1557/adv.2020.402

Source DB:  PubMed          Journal:  MRS Adv        ISSN: 2059-8521


  56 in total

Review 1.  Massively parallel sequencing: the next big thing in genetic medicine.

Authors:  Tracy Tucker; Marco Marra; Jan M Friedman
Journal:  Am J Hum Genet       Date:  2009-08       Impact factor: 11.025

Review 2.  Paving the way to single-molecule protein sequencing.

Authors:  Laura Restrepo-Pérez; Chirlmin Joo; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2018-09-06       Impact factor: 39.213

3.  Direct, concurrent measurements of the forces and currents affecting DNA in a nanopore with comparable topography.

Authors:  Edward M Nelson; Hui Li; Gregory Timp
Journal:  ACS Nano       Date:  2014-05-28       Impact factor: 15.881

4.  Slowing DNA Translocation in a Nanofluidic Field-Effect Transistor.

Authors:  Yifan Liu; Levent Yobas
Journal:  ACS Nano       Date:  2016-04-01       Impact factor: 15.881

5.  Single-File Protein Translocations through Graphene-MoS2 Heterostructure Nanopores.

Authors:  Binquan Luan; Ruhong Zhou
Journal:  J Phys Chem Lett       Date:  2018-06-08       Impact factor: 6.475

6.  Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores.

Authors:  Adam R Hall; Andrew Scott; Dvir Rotem; Kunal K Mehta; Hagan Bayley; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2010-11-28       Impact factor: 39.213

7.  Atomically thin molybdenum disulfide nanopores with high sensitivity for DNA translocation.

Authors:  Ke Liu; Jiandong Feng; Andras Kis; Aleksandra Radenovic
Journal:  ACS Nano       Date:  2014-02-18       Impact factor: 15.881

8.  Reverse DNA translocation through a solid-state nanopore by magnetic tweezers.

Authors:  Hongbo Peng; Xinsheng Sean Ling
Journal:  Nanotechnology       Date:  2009-04-14       Impact factor: 3.874

9.  A low-noise solid-state nanopore platform based on a highly insulating substrate.

Authors:  Min-Hyun Lee; Ashvani Kumar; Kyeong-Beom Park; Seong-Yong Cho; Hyun-Mi Kim; Min-Cheol Lim; Young-Rok Kim; Ki-Bum Kim
Journal:  Sci Rep       Date:  2014-12-12       Impact factor: 4.379

10.  Radiation Tolerance of Nanopore Sequencing Technology for Life Detection on Mars and Europa.

Authors:  Mark A Sutton; Aaron S Burton; Elena Zaikova; Ryan E Sutton; William B Brinckerhoff; Julie G Bevilacqua; Margaret M Weng; Michael J Mumma; Sarah Stewart Johnson
Journal:  Sci Rep       Date:  2019-03-29       Impact factor: 4.379

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  2 in total

Review 1.  A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.

Authors:  Mahmudur Rahman; Kazi Rafiqul Islam; Md Rashedul Islam; Md Jahirul Islam; Md Rejvi Kaysir; Masuma Akter; Md Arifur Rahman; S M Mahfuz Alam
Journal:  Micromachines (Basel)       Date:  2022-06-18       Impact factor: 3.523

Review 2.  Nanopore Technology and Its Applications in Gene Sequencing.

Authors:  Bo Lin; Jianan Hui; Hongju Mao
Journal:  Biosensors (Basel)       Date:  2021-06-30
  2 in total

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