Literature DB >> 29870254

Single-File Protein Translocations through Graphene-MoS2 Heterostructure Nanopores.

Binquan Luan1, Ruhong Zhou1.   

Abstract

Successfully threading unfolded protein molecules through nanopores whose sizes are comparable to that of an amino acid is a prerequisite for the nanopore-based protein sequencing method that promises to be high-throughput and low-cost. While the electric driving method can be effective for a homogeneously charged DNA molecule, it fails to drive an unfolded protein through a nanopore because the net charge of a protein fragment inside of the pore (where the electric field exists) can be positive, negative, or neutral. Here we propose and demonstrate by molecular dynamics simulations protein transport through a nanopore in a quasi-two-dimensional heterostructure stacked together by graphene and molybdenum disulfide (MoS2) nanosheets. Thanks to different van der Waals interactions ( U) between a protein molecule and different 2D surfaces, it is energetically favorable for protein to progressively move from the MoS2 surface to the graphene surface (more negative U) through a nanopore in the heterostructure.

Entities:  

Year:  2018        PMID: 29870254     DOI: 10.1021/acs.jpclett.8b01340

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  9 in total

Review 1.  Understanding interactions between biomolecules and two-dimensional nanomaterials using in silico microscopes.

Authors:  Serena H Chen; David R Bell; Binquan Luan
Journal:  Adv Drug Deliv Rev       Date:  2022-05-19       Impact factor: 17.873

2.  Predicting biomolecule adsorption on MoS2 nanosheets with high structural fidelity.

Authors:  Le Nhan Pham; Tiffany R Walsh
Journal:  Chem Sci       Date:  2022-03-16       Impact factor: 9.969

3.  Insights into protein sequencing with an α-Hemolysin nanopore by atomistic simulations.

Authors:  Giovanni Di Muccio; Aldo Eugenio Rossini; Daniele Di Marino; Giuseppe Zollo; Mauro Chinappi
Journal:  Sci Rep       Date:  2019-04-23       Impact factor: 4.379

4.  FraC nanopores with adjustable diameter identify the mass of opposite-charge peptides with 44 dalton resolution.

Authors:  Gang Huang; Arnout Voet; Giovanni Maglia
Journal:  Nat Commun       Date:  2019-02-19       Impact factor: 14.919

5.  Ångström- and Nano-scale Pore-Based Nucleic Acid Sequencing of Current and Emergent Pathogens.

Authors:  Britney A Shepherd; Md Rubayat-E Tanjil; Yunjo Jeong; Bilgenur Baloğlu; Jingqiu Liao; Michael Cai Wang
Journal:  MRS Adv       Date:  2020-12-01

6.  Revealing Topological Barriers against Knot Untying in Thermal and Mechanical Protein Unfolding by Molecular Dynamics Simulations.

Authors:  Yan Xu; Runshan Kang; Luyao Ren; Lin Yang; Tongtao Yue
Journal:  Biomolecules       Date:  2021-11-13

7.  Spontaneous DNA translocation through a van der Waals heterostructure nanopore for single-molecule detection.

Authors:  Yang Liu; Ye Deng; Yanmei Yang; Yuanyuan Qu; Chao Zhang; Yong-Qiang Li; Mingwen Zhao; Weifeng Li
Journal:  Nanoscale Adv       Date:  2021-08-16

Review 8.  Beyond mass spectrometry, the next step in proteomics.

Authors:  Winston Timp; Gregory Timp
Journal:  Sci Adv       Date:  2020-01-10       Impact factor: 14.136

9.  Fabrication of Nanopore in MoS2-Graphene vdW Heterostructure by Ion Beam Irradiation and the Mechanical Performance.

Authors:  Xin Wu; Ruxue Yang; Xiyue Chen; Wei Liu
Journal:  Nanomaterials (Basel)       Date:  2022-01-07       Impact factor: 5.076

  9 in total

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