Literature DB >> 19420602

Reverse DNA translocation through a solid-state nanopore by magnetic tweezers.

Hongbo Peng1, Xinsheng Sean Ling.   

Abstract

Voltage-driven DNA translocation through nanopores has attracted wide interest for many potential applications in molecular biology and biotechnology. However, it is intrinsically difficult to control the DNA motion in standard DNA translocation processes in which a strong electric field is required in drawing DNA into the pore, but it also leads to uncontrollable fast DNA translocation. Here we explore a new type of DNA translocation. We dub it 'reverse DNA translocation', in which the DNA is pulled through a nanopore mechanically by a magnetic bead, driven by a magnetic-field gradient. This technique is compatible with simultaneous ionic current measurements and is suitable for multiple nanopores, paving the way for large scale applications. We report the first experiment of reverse DNA translocation through a solid-state nanopore using magnetic tweezers.

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Year:  2009        PMID: 19420602      PMCID: PMC2716733          DOI: 10.1088/0957-4484/20/18/185101

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  40 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter.

Authors:  L Q Gu; O Braha; S Conlan; S Cheley; H Bayley
Journal:  Nature       Date:  1999-04-22       Impact factor: 49.962

3.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

4.  Sequence-specific detection of individual DNA strands using engineered nanopores.

Authors:  S Howorka; S Cheley; H Bayley
Journal:  Nat Biotechnol       Date:  2001-07       Impact factor: 54.908

5.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

6.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

7.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

8.  Trapping of megabase-sized DNA molecules during agarose gel electrophoresis.

Authors:  S Gurrieri; S B Smith; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-19       Impact factor: 11.205

9.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  37 in total

1.  Characterizing and controlling the motion of ssDNA in a solid-state nanopore.

Authors:  Binquan Luan; Glenn Martyna; Gustavo Stolovitzky
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  DNA translocation through an array of kinked nanopores.

Authors:  Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal:  Nat Mater       Date:  2010-08       Impact factor: 43.841

3.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

Review 4.  Controlling molecular transport through nanopores.

Authors:  Ulrich F Keyser
Journal:  J R Soc Interface       Date:  2011-06-29       Impact factor: 4.118

5.  A tip-attached tuning fork sensor for the control of DNA translocation through a nanopore.

Authors:  Changbae Hyun; Harpreet Kaur; Tao Huang; Jiali Li
Journal:  Rev Sci Instrum       Date:  2017-02       Impact factor: 1.523

6.  Analysis of single nucleic acid molecules with protein nanopores.

Authors:  Giovanni Maglia; Andrew J Heron; David Stoddart; Deanpen Japrung; Hagan Bayley
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

7.  Review of massively parallel DNA sequencing technologies.

Authors:  Sowmiya Moorthie; Christopher J Mattocks; Caroline F Wright
Journal:  Hugo J       Date:  2011-10-27

8.  Nanopore Sequencing: Electrical Measurements of the Code of Life.

Authors:  Winston Timp; Utkur M Mirsaidov; Deqiang Wang; Jeff Comer; Aleksei Aksimentiev; Gregory Timp
Journal:  IEEE Trans Nanotechnol       Date:  2010-05-01       Impact factor: 2.570

9.  Mechanical Trapping of DNA in a Double-Nanopore System.

Authors:  Sergii Pud; Shu-Han Chao; Maxim Belkin; Daniel Verschueren; Teun Huijben; Casper van Engelenburg; Cees Dekker; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2016-12-01       Impact factor: 11.189

10.  High-permeability functionalized silicone magnetic microspheres with low autofluorescence for biomedical applications.

Authors:  Benjamin A Evans; Julia C Ronecker; David T Han; Daniel R Glass; Tonya L Train; Alison E Deatsch
Journal:  Mater Sci Eng C Mater Biol Appl       Date:  2016-02-13       Impact factor: 7.328

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