Literature DB >> 33436623

Structural basis for the multi-activity factor Rad5 in replication stress tolerance.

Miaomiao Shen1,2,3, Nalini Dhingra4, Quan Wang5, Chen Cheng6, Songbiao Zhu7, Xiaolin Tian7, Jun Yu8, Xiaoxin Gong1,2,3, Xuzhichao Li1,2,3, Hongwei Zhang8, Xin Xu1,2,3, Liting Zhai8, Min Xie8, Ying Gao8, Haiteng Deng7, Yongning He6, Hengyao Niu5, Xiaolan Zhao4, Song Xiang9,10,11.   

Abstract

The yeast protein Rad5 and its orthologs in other eukaryotes promote replication stress tolerance and cell survival using their multiple activities, including ubiquitin ligase, replication fork remodeling and DNA lesion targeting activities. Here, we present the crystal structure of a nearly full-length Rad5 protein. The structure shows three distinct, but well-connected, domains required for Rad5's activities. The spatial arrangement of these domains suggest that different domains can have autonomous activities but also undergo intrinsic coordination. Moreover, our structural, biochemical and cellular studies demonstrate that Rad5's HIRAN domain mediates interactions with the DNA metabolism maestro factor PCNA and contributes to its poly-ubiquitination, binds to DNA and contributes to the Rad5-catalyzed replication fork regression, defining a new type of HIRAN domains with multiple activities. Our work provides a framework to understand how Rad5 integrates its various activities in replication stress tolerance.

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Year:  2021        PMID: 33436623      PMCID: PMC7804152          DOI: 10.1038/s41467-020-20538-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  54 in total

1.  Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54.

Authors:  Nicolas H Thomä; Bryan K Czyzewski; Andrei A Alexeev; Alexander V Mazin; Stephen C Kowalczykowski; Nikola P Pavletich
Journal:  Nat Struct Mol Biol       Date:  2005-04-03       Impact factor: 15.369

2.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

3.  DALI and the persistence of protein shape.

Authors:  Liisa Holm
Journal:  Protein Sci       Date:  2019-11-05       Impact factor: 6.725

4.  Rad5 coordinates translesion DNA synthesis pathway by recognizing specific DNA structures in saccharomyces cerevisiae.

Authors:  Qifu Fan; Xin Xu; Xi Zhao; Qian Wang; Wei Xiao; Ying Guo; Yu V Fu
Journal:  Curr Genet       Date:  2018-02-02       Impact factor: 3.886

Review 5.  Role of yeast Rad5 and its human orthologs, HLTF and SHPRH in DNA damage tolerance.

Authors:  Ildiko Unk; Ildikó Hajdú; András Blastyák; Lajos Haracska
Journal:  DNA Repair (Amst)       Date:  2010-01-21

6.  Saccharomyces cerevisiae RAD5-encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome.

Authors:  R E Johnson; S T Henderson; T D Petes; S Prakash; M Bankmann; L Prakash
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

7.  The HIRAN domain of helicase-like transcription factor positions the DNA translocase motor to drive efficient DNA fork regression.

Authors:  Diana A Chavez; Briana H Greer; Brandt F Eichman
Journal:  J Biol Chem       Date:  2018-04-11       Impact factor: 5.157

8.  Rad5-dependent DNA repair functions of the Saccharomyces cerevisiae FANCM protein homolog Mph1.

Authors:  Danielle L Daee; Elisa Ferrari; Simonne Longerich; Xiao-feng Zheng; Xiaoyu Xue; Dana Branzei; Patrick Sung; Kyungjae Myung
Journal:  J Biol Chem       Date:  2012-06-12       Impact factor: 5.157

9.  Structure and regulation of the human INO80-nucleosome complex.

Authors:  Rafael Ayala; Oliver Willhoft; Ricardo J Aramayo; Martin Wilkinson; Elizabeth A McCormack; Lorraine Ocloo; Dale B Wigley; Xiaodong Zhang
Journal:  Nature       Date:  2018-04-11       Impact factor: 49.962

10.  Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1.

Authors:  Xin Xu; Aiyang Lin; Cuiyan Zhou; Susan R Blackwell; Yiran Zhang; Zihao Wang; Qianqian Feng; Ruifang Guan; Michelle D Hanna; Zhucheng Chen; Wei Xiao
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

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  3 in total

Review 1.  Post-Translational Modifications of PCNA: Guiding for the Best DNA Damage Tolerance Choice.

Authors:  Gemma Bellí; Neus Colomina; Laia Castells-Roca; Neus P Lorite
Journal:  J Fungi (Basel)       Date:  2022-06-10

2.  Structure of Rad5 provides insights into its role in tolerance to replication stress.

Authors:  Miaomiao Shen; Nalini Dhingra; Quan Wang; Xiaoxin Gong; Xin Xu; Hengyao Niu; Xiaolan Zhao; Song Xiang
Journal:  Mol Cell Oncol       Date:  2021-03-04

3.  Fission yeast Rad8/HLTF facilitates Rad52-dependent chromosomal rearrangements through PCNA lysine 107 ubiquitination.

Authors:  Jie Su; Ran Xu; Piyusha Mongia; Naoko Toyofuku; Takuro Nakagawa
Journal:  PLoS Genet       Date:  2021-07-22       Impact factor: 5.917

  3 in total

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