Literature DB >> 33436578

Interplay between chromosomal alterations and gene mutations shapes the evolutionary trajectory of clonal hematopoiesis.

Teng Gao1,2, Ryan Ptashkin3, Kelly L Bolton4, Maria Sirenko1, Christopher Fong1, Barbara Spitzer5, Kamal Menghrajani4, Juan E Arango Ossa1,2,5, Yangyu Zhou1,2,5, Elsa Bernard1,2, Max Levine1,2,5, Juan S Medina Martinez1,2,5, Yanming Zhang6, Sebastià Franch-Expósito3, Minal Patel2, Lior Z Braunstein7, Daniel Kelly8, Mariko Yabe3, Ryma Benayed3, Nicole M Caltabellotta2, John Philip9, Ederlinda Paraiso10,11, Simon Mantha12, David B Solit11,13,14, Luis A Diaz13,15, Michael F Berger3,16, Virginia Klimek12,17, Ross L Levine2,4,11,15, Ahmet Zehir3, Sean M Devlin18, Elli Papaemmanuil19,20,21,22.   

Abstract

Stably acquired mutations in hematopoietic cells represent substrates of selection that may lead to clonal hematopoiesis (CH), a common state in cancer patients that is associated with a heightened risk of leukemia development. Owing to technical and sample size limitations, most CH studies have characterized gene mutations or mosaic chromosomal alterations (mCAs) individually. Here we leverage peripheral blood sequencing data from 32,442 cancer patients to jointly characterize gene mutations (n = 14,789) and mCAs (n = 383) in CH. Recurrent composite genotypes resembling known genetic interactions in leukemia genomes underlie 23% of all detected autosomal alterations, indicating that these selection mechanisms are operative early in clonal evolution. CH with composite genotypes defines a patient group at high risk of leukemia progression (3-year cumulative incidence 14.6%, CI: 7-22%). Multivariable analysis identifies mCA as an independent risk factor for leukemia development (HR = 14, 95% CI: 6-33, P < 0.001). Our results suggest that mCA should be considered in conjunction with gene mutations in the surveillance of patients at risk of hematologic neoplasms.

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Year:  2021        PMID: 33436578      PMCID: PMC7804935          DOI: 10.1038/s41467-020-20565-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  45 in total

1.  Genomic Classification and Prognosis in Acute Myeloid Leukemia.

Authors:  Elli Papaemmanuil; Moritz Gerstung; Hartmut Döhner; Peter J Campbell; Lars Bullinger; Verena I Gaidzik; Peter Paschka; Nicola D Roberts; Nicola E Potter; Michael Heuser; Felicitas Thol; Niccolo Bolli; Gunes Gundem; Peter Van Loo; Inigo Martincorena; Peter Ganly; Laura Mudie; Stuart McLaren; Sarah O'Meara; Keiran Raine; David R Jones; Jon W Teague; Adam P Butler; Mel F Greaves; Arnold Ganser; Konstanze Döhner; Richard F Schlenk
Journal:  N Engl J Med       Date:  2016-06-09       Impact factor: 91.245

2.  Therapy-Related Clonal Hematopoiesis in Patients with Non-hematologic Cancers Is Common and Associated with Adverse Clinical Outcomes.

Authors:  Catherine C Coombs; Ahmet Zehir; Sean M Devlin; Ashwin Kishtagari; Aijazuddin Syed; Philip Jonsson; David M Hyman; David B Solit; Mark E Robson; José Baselga; Maria E Arcila; Marc Ladanyi; Martin S Tallman; Ross L Levine; Michael F Berger
Journal:  Cell Stem Cell       Date:  2017-08-10       Impact factor: 24.633

3.  Genomic Classification in Acute Myeloid Leukemia.

Authors:  Elli Papaemmanuil; Hartmut Döhner; Peter J Campbell
Journal:  N Engl J Med       Date:  2016-09-01       Impact factor: 91.245

4.  The 2016 Revision to the World Health Organization Classification of Myelodysplastic Syndromes.

Authors:  Ming Hong; Guangsheng He
Journal:  J Transl Int Med       Date:  2017-09-30

5.  Driver somatic mutations identify distinct disease entities within myeloid neoplasms with myelodysplasia.

Authors:  Luca Malcovati; Elli Papaemmanuil; Ilaria Ambaglio; Chiara Elena; Anna Gallì; Matteo G Della Porta; Erica Travaglino; Daniela Pietra; Cristiana Pascutto; Marta Ubezio; Elisa Bono; Matteo C Da Vià; Angela Brisci; Francesca Bruno; Laura Cremonesi; Maurizio Ferrari; Emanuela Boveri; Rosangela Invernizzi; Peter J Campbell; Mario Cazzola
Journal:  Blood       Date:  2014-06-26       Impact factor: 22.113

Review 6.  The hallmarks of aging.

Authors:  Carlos López-Otín; Maria A Blasco; Linda Partridge; Manuel Serrano; Guido Kroemer
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

7.  Age-related mutations associated with clonal hematopoietic expansion and malignancies.

Authors:  Mingchao Xie; Charles Lu; Jiayin Wang; Michael D McLellan; Kimberly J Johnson; Michael C Wendl; Joshua F McMichael; Heather K Schmidt; Venkata Yellapantula; Christopher A Miller; Bradley A Ozenberger; John S Welch; Daniel C Link; Matthew J Walter; Elaine R Mardis; John F Dipersio; Feng Chen; Richard K Wilson; Timothy J Ley; Li Ding
Journal:  Nat Med       Date:  2014-10-19       Impact factor: 53.440

8.  Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.

Authors:  Ahmet Zehir; Ryma Benayed; Ronak H Shah; Aijazuddin Syed; Sumit Middha; Hyunjae R Kim; Preethi Srinivasan; Jianjiong Gao; Debyani Chakravarty; Sean M Devlin; Matthew D Hellmann; David A Barron; Alison M Schram; Meera Hameed; Snjezana Dogan; Dara S Ross; Jaclyn F Hechtman; Deborah F DeLair; JinJuan Yao; Diana L Mandelker; Donavan T Cheng; Raghu Chandramohan; Abhinita S Mohanty; Ryan N Ptashkin; Gowtham Jayakumaran; Meera Prasad; Mustafa H Syed; Anoop Balakrishnan Rema; Zhen Y Liu; Khedoudja Nafa; Laetitia Borsu; Justyna Sadowska; Jacklyn Casanova; Ruben Bacares; Iwona J Kiecka; Anna Razumova; Julie B Son; Lisa Stewart; Tessara Baldi; Kerry A Mullaney; Hikmat Al-Ahmadie; Efsevia Vakiani; Adam A Abeshouse; Alexander V Penson; Philip Jonsson; Niedzica Camacho; Matthew T Chang; Helen H Won; Benjamin E Gross; Ritika Kundra; Zachary J Heins; Hsiao-Wei Chen; Sarah Phillips; Hongxin Zhang; Jiaojiao Wang; Angelica Ochoa; Jonathan Wills; Michael Eubank; Stacy B Thomas; Stuart M Gardos; Dalicia N Reales; Jesse Galle; Robert Durany; Roy Cambria; Wassim Abida; Andrea Cercek; Darren R Feldman; Mrinal M Gounder; A Ari Hakimi; James J Harding; Gopa Iyer; Yelena Y Janjigian; Emmet J Jordan; Ciara M Kelly; Maeve A Lowery; Luc G T Morris; Antonio M Omuro; Nitya Raj; Pedram Razavi; Alexander N Shoushtari; Neerav Shukla; Tara E Soumerai; Anna M Varghese; Rona Yaeger; Jonathan Coleman; Bernard Bochner; Gregory J Riely; Leonard B Saltz; Howard I Scher; Paul J Sabbatini; Mark E Robson; David S Klimstra; Barry S Taylor; Jose Baselga; Nikolaus Schultz; David M Hyman; Maria E Arcila; David B Solit; Marc Ladanyi; Michael F Berger
Journal:  Nat Med       Date:  2017-05-08       Impact factor: 53.440

9.  Monogenic and polygenic inheritance become instruments for clonal selection.

Authors:  Po-Ru Loh; Giulio Genovese; Steven A McCarroll
Journal:  Nature       Date:  2020-06-24       Impact factor: 49.962

10.  Classification and Personalized Prognosis in Myeloproliferative Neoplasms.

Authors:  Jacob Grinfeld; Jyoti Nangalia; E Joanna Baxter; David C Wedge; Nicos Angelopoulos; Robert Cantrill; Anna L Godfrey; Elli Papaemmanuil; Gunes Gundem; Cathy MacLean; Julia Cook; Laura O'Neil; Sarah O'Meara; Jon W Teague; Adam P Butler; Charlie E Massie; Nicholas Williams; Francesca L Nice; Christen L Andersen; Hans C Hasselbalch; Paola Guglielmelli; Mary F McMullin; Alessandro M Vannucchi; Claire N Harrison; Moritz Gerstung; Anthony R Green; Peter J Campbell
Journal:  N Engl J Med       Date:  2018-10-11       Impact factor: 91.245

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  11 in total

1.  Screening of early-staged colorectal neoplasia by clonal hematopoiesis-based liquid biopsy and machine-learning.

Authors:  Yin-Chen Hsu; Sin-Ming Huang; Li-Chun Chang; Yan-Ming Chen; Ya-Hsuan Chang; Jing-Wei Lin; Chien-Chia Lin; Ching-Wen Chen; Hsuan-Yu Chen; Han-Mo Chiu; Sung-Liang Yu
Journal:  Am J Cancer Res       Date:  2022-03-15       Impact factor: 6.166

2.  Distinction of lymphoid and myeloid clonal hematopoiesis.

Authors:  Abhishek Niroula; Aswin Sekar; Mark A Murakami; Mark Trinder; Mridul Agrawal; Waihay J Wong; Alexander G Bick; Md Mesbah Uddin; Christopher J Gibson; Gabriel K Griffin; Michael C Honigberg; Seyedeh M Zekavat; Kaavya Paruchuri; Pradeep Natarajan; Benjamin L Ebert
Journal:  Nat Med       Date:  2021-10-18       Impact factor: 53.440

3.  Toward More Complete Prognostication for Patients with Clonal Hematopoiesis.

Authors:  Barbara Spitzer; Ross L Levine
Journal:  Blood Cancer Discov       Date:  2021-03-03

Review 4.  Clonal Hematopoiesis: Role in Hematologic and Non-Hematologic Malignancies.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
Journal:  Mediterr J Hematol Infect Dis       Date:  2022-09-01       Impact factor: 3.122

5.  Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis.

Authors:  Ryunosuke Saiki; Yukihide Momozawa; Yasuhito Nannya; Masahiro M Nakagawa; Yotaro Ochi; Tetsuichi Yoshizato; Chikashi Terao; Yutaka Kuroda; Yuichi Shiraishi; Kenichi Chiba; Hiroko Tanaka; Atsushi Niida; Seiya Imoto; Koichi Matsuda; Takayuki Morisaki; Yoshinori Murakami; Yoichiro Kamatani; Shuichi Matsuda; Michiaki Kubo; Satoru Miyano; Hideki Makishima; Seishi Ogawa
Journal:  Nat Med       Date:  2021-07-08       Impact factor: 53.440

Review 6.  Germline risk of clonal haematopoiesis.

Authors:  Alexander J Silver; Alexander G Bick; Michael R Savona
Journal:  Nat Rev Genet       Date:  2021-05-13       Impact factor: 53.242

7.  Measures of Clonal Hematopoiesis: Are We Missing Something?

Authors:  Leonid V Bystrykh; Mirjam E Belderbos
Journal:  Front Med (Lausanne)       Date:  2022-03-31

Review 8.  Inflammatory Cytokines Shape an Altered Immune Response During Myeloid Malignancies.

Authors:  Virginia Camacho; Valeriya Kuznetsova; Robert S Welner
Journal:  Front Immunol       Date:  2021-11-03       Impact factor: 7.561

Review 9.  Innate immune pathways and inflammation in hematopoietic aging, clonal hematopoiesis, and MDS.

Authors:  Jennifer J Trowbridge; Daniel T Starczynowski
Journal:  J Exp Med       Date:  2021-06-15       Impact factor: 17.579

Review 10.  Clonal hematopoiesis and its emerging effects on cellular therapies.

Authors:  Malte von Bonin; Helena Klara Jambor; Raphael Teipel; Friedrich Stölzel; Christian Thiede; Frederik Damm; Frank Kroschinsky; Johannes Schetelig; Triantafyllos Chavakis; Martin Bornhäuser
Journal:  Leukemia       Date:  2021-07-02       Impact factor: 11.528

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