Literature DB >> 33431561

Deep learning and computer vision will transform entomology.

Toke T Høye1,2, Johanna Ärje3,2,4, Kim Bjerge5, Oskar L P Hansen3,2,6,7,8, Alexandros Iosifidis9, Florian Leese10, Hjalte M R Mann3,2, Kristian Meissner11, Claus Melvad2,5, Jenni Raitoharju11.   

Abstract

Most animal species on Earth are insects, and recent reports suggest that their abundance is in drastic decline. Although these reports come from a wide range of insect taxa and regions, the evidence to assess the extent of the phenomenon is sparse. Insect populations are challenging to study, and most monitoring methods are labor intensive and inefficient. Advances in computer vision and deep learning provide potential new solutions to this global challenge. Cameras and other sensors can effectively, continuously, and noninvasively perform entomological observations throughout diurnal and seasonal cycles. The physical appearance of specimens can also be captured by automated imaging in the laboratory. When trained on these data, deep learning models can provide estimates of insect abundance, biomass, and diversity. Further, deep learning models can quantify variation in phenotypic traits, behavior, and interactions. Here, we connect recent developments in deep learning and computer vision to the urgent demand for more cost-efficient monitoring of insects and other invertebrates. We present examples of sensor-based monitoring of insects. We show how deep learning tools can be applied to exceptionally large datasets to derive ecological information and discuss the challenges that lie ahead for the implementation of such solutions in entomology. We identify four focal areas, which will facilitate this transformation: 1) validation of image-based taxonomic identification; 2) generation of sufficient training data; 3) development of public, curated reference databases; and 4) solutions to integrate deep learning and molecular tools.

Keywords:  automated monitoring; ecology; image-based identification; insects; machine learning

Year:  2021        PMID: 33431561      PMCID: PMC7812775          DOI: 10.1073/pnas.2002545117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Mass Seasonal Migrations of Hoverflies Provide Extensive Pollination and Crop Protection Services.

Authors:  Karl R Wotton; Boya Gao; Myles H M Menz; Roger K A Morris; Stuart G Ball; Ka S Lim; Don R Reynolds; Gao Hu; Jason W Chapman
Journal:  Curr Biol       Date:  2019-06-13       Impact factor: 10.834

2.  Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines.

Authors:  Gerardo Ceballos; Paul R Ehrlich; Rodolfo Dirzo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-10       Impact factor: 11.205

Review 3.  Insect Declines in the Anthropocene.

Authors:  David L Wagner
Journal:  Annu Rev Entomol       Date:  2019-10-14       Impact factor: 19.686

4.  Application of deep learning in aquatic bioassessment: Towards automated identification of non-biting midges.

Authors:  Djuradj Milošević; Aleksandar Milosavljević; Bratislav Predić; Andrew S Medeiros; Dimitrija Savić-Zdravković; Milica Stojković Piperac; Tijana Kostić; Filip Spasić; Florian Leese
Journal:  Sci Total Environ       Date:  2019-11-14       Impact factor: 7.963

5.  Declines in an abundant aquatic insect, the burrowing mayfly, across major North American waterways.

Authors:  Phillip M Stepanian; Sally A Entrekin; Charlotte E Wainwright; Djordje Mirkovic; Jennifer L Tank; Jeffrey F Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

6.  Automated video monitoring of insect pollinators in the field.

Authors:  Luca Pegoraro; Oriane Hidalgo; Ilia J Leitch; Jaume Pellicer; Sarah E Barlow
Journal:  Emerg Top Life Sci       Date:  2020-07-02

7.  No specimen left behind: industrial scale digitization of natural history collections.

Authors:  Vladimir Blagoderov; Ian J Kitching; Laurence Livermore; Thomas J Simonsen; Vincent S Smith
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

8.  An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging.

Authors:  Bernhard Ströbel; Sebastian Schmelzle; Nico Blüthgen; Michael Heethoff
Journal:  Zookeys       Date:  2018-05-17       Impact factor: 1.546

9.  Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning.

Authors:  Mohammad Sadegh Norouzzadeh; Anh Nguyen; Margaret Kosmala; Alexandra Swanson; Meredith S Palmer; Craig Packer; Jeff Clune
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-05       Impact factor: 11.205

10.  Species-level image classification with convolutional neural network enables insect identification from habitus images.

Authors:  Oskar L P Hansen; Jens-Christian Svenning; Kent Olsen; Steen Dupont; Beulah H Garner; Alexandros Iosifidis; Benjamin W Price; Toke T Høye
Journal:  Ecol Evol       Date:  2019-12-24       Impact factor: 2.912

View more
  24 in total

1.  Insect decline in the Anthropocene: Death by a thousand cuts.

Authors:  David L Wagner; Eliza M Grames; Matthew L Forister; May R Berenbaum; David Stopak
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

2.  Long-term abundance trends of insect taxa are only weakly correlated.

Authors:  Roel van Klink; Diana E Bowler; Konstantin B Gongalsky; Jonathan M Chase
Journal:  Biol Lett       Date:  2022-02-23       Impact factor: 3.703

3.  Sticky Pi is a high-frequency smart trap that enables the study of insect circadian activity under natural conditions.

Authors:  Quentin Geissmann; Paul K Abram; Di Wu; Cara H Haney; Juli Carrillo
Journal:  PLoS Biol       Date:  2022-07-07       Impact factor: 9.593

4.  Moths complement bumblebee pollination of red clover: a case for day-and-night insect surveillance.

Authors:  Jamie Alison; Jake M Alexander; Nathan Diaz Zeugin; Yoko L Dupont; Evelin Iseli; Hjalte M R Mann; Toke T Høye
Journal:  Biol Lett       Date:  2022-07-13       Impact factor: 3.812

5.  Assessing the effect of complex ground types on ground-dwelling arthropod movements with video monitoring: Dealing with concealed movements under a layer of plant residues.

Authors:  Blanche Collard; Philippe Tixier; Dominique Carval; Claire Lavigne; Thomas Delattre
Journal:  Ecol Evol       Date:  2022-07-11       Impact factor: 3.167

6.  A Computer Vision Approach to Identifying Ticks Related to Lyme Disease.

Authors:  Sina Akbarian; Mark P Nelder; Curtis B Russell; Tania Cawston; Laurent Moreno; Samir N Patel; Vanessa G Allen; Elham Dolatabadi
Journal:  IEEE J Transl Eng Health Med       Date:  2021-12-30

7.  Diel Periodicity in Males of the Navel Orangeworm (Lepidoptera: Pyralidae) as Revealed by Automated Camera Traps.

Authors:  Charles S Burks; Foster S Hengst; Houston Wilson; Jacob A Wenger
Journal:  J Insect Sci       Date:  2022-09-01       Impact factor: 2.066

8.  The effect of resource limitation on the temperature dependence of mosquito population fitness.

Authors:  Paul J Huxley; Kris A Murray; Samraat Pawar; Lauren J Cator
Journal:  Proc Biol Sci       Date:  2021-04-28       Impact factor: 5.349

9.  An Automated Light Trap to Monitor Moths (Lepidoptera) Using Computer Vision-Based Tracking and Deep Learning.

Authors:  Kim Bjerge; Jakob Bonde Nielsen; Martin Videbæk Sepstrup; Flemming Helsing-Nielsen; Toke Thomas Høye
Journal:  Sensors (Basel)       Date:  2021-01-06       Impact factor: 3.576

10.  Edge Computing for Vision-Based, Urban-Insects Traps in the Context of Smart Cities.

Authors:  Ioannis Saradopoulos; Ilyas Potamitis; Stavros Ntalampiras; Antonios I Konstantaras; Emmanuel N Antonidakis
Journal:  Sensors (Basel)       Date:  2022-03-04       Impact factor: 3.576

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.