Literature DB >> 22859884

No specimen left behind: industrial scale digitization of natural history collections.

Vladimir Blagoderov1, Ian J Kitching, Laurence Livermore, Thomas J Simonsen, Vincent S Smith.   

Abstract

Traditional approaches for digitizing natural history collections, which include both imaging and metadata capture, are both labour- and time-intensive. Mass-digitization can only be completed if the resource-intensive steps, such as specimen selection and databasing of associated information, are minimized. Digitization of larger collections should employ an "industrial" approach, using the principles of automation and crowd sourcing, with minimal initial metadata collection including a mandatory persistent identifier. A new workflow for the mass-digitization of natural history museum collections based on these principles, and using SatScan® tray scanning system, is described.

Entities:  

Keywords:  Digitization; biodiversity informatics; imaging; natural history collections; specimen metadata

Year:  2012        PMID: 22859884      PMCID: PMC3406472          DOI: 10.3897/zookeys.209.3178

Source DB:  PubMed          Journal:  Zookeys        ISSN: 1313-2970            Impact factor:   1.546


  5 in total

1.  Whole-drawer imaging for digital management and curation of a large entomological collection.

Authors:  Beth Louise Mantle; John La Salle; Nicole Fisher
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

2.  DScan - a high-performance digital scanning system for entomological collections.

Authors:  Stefan Schmidt; Michael Balke; Stefan Lafogler
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

3.  Results and insights from the NCSU Insect Museum GigaPan project.

Authors:  Matthew A Bertone; Robert L Blinn; Tanner M Stanfield; Kelly J Dew; Katja C Seltmann; Andrew R Deans
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

4.  The notes from nature tool for unlocking biodiversity records from museum records through citizen science.

Authors:  Andrew Hill; Robert Guralnick; Arfon Smith; Andrew Sallans; Michael Denslow; Joyce Gross; Zack Murrell; Peter Oboyski; Joan Ball; Andrea Thomer; Robert Prys-Jones; Javier de Torre; Patrick Kociolek; Lucy Fortson
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

5.  InvertNet: a new paradigm for digital access to invertebrate collections.

Authors:  Chris Dietrich; John Hart; David Raila; Umberto Ravaioli; Nahil Sobh; Omar Sobh; Chris Taylor
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

  5 in total
  30 in total

1.  Deep learning and computer vision will transform entomology.

Authors:  Toke T Høye; Johanna Ärje; Kim Bjerge; Oskar L P Hansen; Alexandros Iosifidis; Florian Leese; Hjalte M R Mann; Kristian Meissner; Claus Melvad; Jenni Raitoharju
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

Review 2.  The history and impact of digitization and digital data mobilization on biodiversity research.

Authors:  Gil Nelson; Shari Ellis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.237

3.  Bringing collections out of the dark.

Authors:  Vincent S Smith; Vladimir Blagoderov
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

4.  Morphometric measurements of dragonfly wings: the accuracy of pinned, scanned and detached measurement methods.

Authors:  Laura Johnson; Beth L Mantle; Janet L Gardner; Patricia R Y Backwell
Journal:  Zookeys       Date:  2013-03-08       Impact factor: 1.546

5.  Digitization workflows for flat sheets and packets of plants, algae, and fungi.

Authors:  Gil Nelson; Patrick Sweeney; Lisa E Wallace; Richard K Rabeler; Dorothy Allard; Herrick Brown; J Richard Carter; Michael W Denslow; Elizabeth R Ellwood; Charlotte C Germain-Aubrey; Ed Gilbert; Emily Gillespie; Leslie R Goertzen; Ben Legler; D Blaine Marchant; Travis D Marsico; Ashley B Morris; Zack Murrell; Mare Nazaire; Chris Neefus; Shanna Oberreiter; Deborah Paul; Brad R Ruhfel; Thomas Sasek; Joey Shaw; Pamela S Soltis; Kimberly Watson; Andrea Weeks; Austin R Mast
Journal:  Appl Plant Sci       Date:  2015-09-10       Impact factor: 1.936

6.  Can whole-drawer images measure up? A reply to Johnson et al. (2013)?

Authors:  John W H Trueman; David K Yeates
Journal:  Zookeys       Date:  2015-04-27       Impact factor: 1.546

7.  Capturing natural-colour 3D models of insects for species discovery and diagnostics.

Authors:  Chuong V Nguyen; David R Lovell; Matt Adcock; John La Salle
Journal:  PLoS One       Date:  2014-04-23       Impact factor: 3.240

8.  Digital technology and the conservation of nature.

Authors:  Koen Arts; René van der Wal; William M Adams
Journal:  Ambio       Date:  2015-11       Impact factor: 5.129

9.  Inselect: Automating the Digitization of Natural History Collections.

Authors:  Lawrence N Hudson; Vladimir Blagoderov; Alice Heaton; Pieter Holtzhausen; Laurence Livermore; Benjamin W Price; Stéfan van der Walt; Vincent S Smith
Journal:  PLoS One       Date:  2015-11-23       Impact factor: 3.240

10.  Biodiversity into your hands - A call for a virtual global natural history 'metacollection'.

Authors:  Michael Balke; Stefan Schmidt; Axel Hausmann; Emmanuel Fa Toussaint; Johannes Bergsten; Matthew Buffington; Christoph L Häuser; Alexander Kroupa; Gregor Hagedorn; Alexander Riedel; Andrew Polaszek; Rosichon Ubaidillah; Lars Krogmann; Andreas Zwick; Martin Fikáček; Jiří Hájek; Mariano C Michat; Christopher Dietrich; John La Salle; Beth Mantle; Peter Kl Ng; Donald Hobern
Journal:  Front Zool       Date:  2013-09-17       Impact factor: 3.172

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