Literature DB >> 33426479

The case for open science: rare diseases.

Yaffa R Rubinstein1, Peter N Robinson2, William A Gahl3, Paul Avillach4, Gareth Baynam5, Helene Cederroth6, Rebecca M Goodwin7, Stephen C Groft8, Mats G Hansson9, Nomi L Harris10, Vojtech Huser11, Deborah Mascalzoni12, Julie A McMurry13, Matthew Might14, Christoffer Nellaker15, Barend Mons16, Dina N Paltoo7, Jonathan Pevsner17, Manuel Posada18, Alison P Rockett-Frase19, Marco Roos20, Tamar B Rubinstein21, Domenica Taruscio22, Esther van Enckevort23, Melissa A Haendel13.   

Abstract

The premise of Open Science is that research and medical management will progress faster if data and knowledge are openly shared. The value of Open Science is nowhere more important and appreciated than in the rare disease (RD) community. Research into RDs has been limited by insufficient patient data and resources, a paucity of trained disease experts, and lack of therapeutics, leading to long delays in diagnosis and treatment. These issues can be ameliorated by following the principles and practices of sharing that are intrinsic to Open Science. Here, we describe how the RD community has adopted the core pillars of Open Science, adding new initiatives to promote care and research for RD patients and, ultimately, for all of medicine. We also present recommendations that can advance Open Science more globally. Published by Oxford University Press on behalf of the American Medical Informatics Association 2020.

Entities:  

Keywords:  FAIR data; common data elements; data standards; ontology; open science; rare disease patients

Year:  2020        PMID: 33426479      PMCID: PMC7660964          DOI: 10.1093/jamiaopen/ooaa030

Source DB:  PubMed          Journal:  JAMIA Open        ISSN: 2574-2531


  104 in total

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Authors:  Edward P Ambinder
Journal:  J Oncol Pract       Date:  2005-07       Impact factor: 3.840

2.  A database of locus-specific databases.

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Journal:  Nat Genet       Date:  2007-04       Impact factor: 38.330

3.  Scientific decision-making and stakeholder consultations: the case of salt recommendations.

Authors:  Lada Timotijevic; Julie Barnett; Kerry Brown; Monique M Raats; Richard Shepherd
Journal:  Soc Sci Med       Date:  2013-02-28       Impact factor: 4.634

4.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

5.  Telemedicine for screening diabetic retinopathy: The NO BLIND Italian multicenter study.

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Journal:  Diabetes Metab Res Rev       Date:  2019-01-07       Impact factor: 4.876

Review 6.  Classification, Ontology, and Precision Medicine.

Authors:  Melissa A Haendel; Christopher G Chute; Peter N Robinson
Journal:  N Engl J Med       Date:  2018-10-11       Impact factor: 91.245

7.  The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).

Authors:  Jacqueline MacArthur; Emily Bowler; Maria Cerezo; Laurent Gil; Peggy Hall; Emma Hastings; Heather Junkins; Aoife McMahon; Annalisa Milano; Joannella Morales; Zoe May Pendlington; Danielle Welter; Tony Burdett; Lucia Hindorff; Paul Flicek; Fiona Cunningham; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

8.  Key outcomes from stakeholder workshops at a symposium to inform the development of an Australian national plan for rare diseases.

Authors:  Caron Molster; Leanne Youngs; Emma Hammond; Hugh Dawkins
Journal:  Orphanet J Rare Dis       Date:  2012-08-10       Impact factor: 4.123

9.  Information needs of physicians regarding the diagnosis of rare diseases: a questionnaire-based study in Belgium.

Authors:  Liese Vandeborne; Eline van Overbeeke; Marc Dooms; Birgit De Beleyr; Isabelle Huys
Journal:  Orphanet J Rare Dis       Date:  2019-05-04       Impact factor: 4.123

Review 10.  Artificial Intelligence (AI) in Rare Diseases: Is the Future Brighter?

Authors:  Sandra Brasil; Carlota Pascoal; Rita Francisco; Vanessa Dos Reis Ferreira; Paula A Videira; And Gonçalo Valadão
Journal:  Genes (Basel)       Date:  2019-11-27       Impact factor: 4.096

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Authors:  Domenica Taruscio; Alberto Mantovani
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3.  GA4GH: International policies and standards for data sharing across genomic research and healthcare.

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Journal:  Cell Genom       Date:  2021-11-10

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Journal:  Orphanet J Rare Dis       Date:  2021-10-22       Impact factor: 4.123

Review 6.  Opportunities and Challenges for Machine Learning in Rare Diseases.

Authors:  Sergio Decherchi; Elena Pedrini; Marina Mordenti; Andrea Cavalli; Luca Sangiorgi
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7.  Open Science Within Pediatric Medical and Mental Health Systems: Practical Considerations for Behavioral Health Researchers.

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9.  Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond.

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Journal:  Hum Mutat       Date:  2022-04-08       Impact factor: 4.700

  9 in total

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