Literature DB >> 33413580

Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment.

Wancheng Zhao1, Alex Kirui1, Fabien Deligey1, Frederic Mentink-Vigier2, Yihua Zhou3, Baocai Zhang3, Tuo Wang4.   

Abstract

BACKGROUND: Multidimensional solid-state nuclear magnetic resonance (ssNMR) spectroscopy has emerged as an indispensable technique for resolving polymer structure and intermolecular packing in primary and secondary plant cell walls. Isotope (13C) enrichment provides feasible sensitivity for measuring 2D/3D correlation spectra, but this time-consuming procedure and its associated expenses have restricted the application of ssNMR in lignocellulose analysis.
RESULTS: Here, we present a method that relies on the sensitivity-enhancing technique Dynamic Nuclear Polarization (DNP) to eliminate the need for 13C-labeling. With a 26-fold sensitivity enhancement, a series of 2D 13C-13C correlation spectra were successfully collected using the unlabeled stems of wild-type Oryza sativa (rice). The atomic resolution allows us to observe a large number of intramolecular cross peaks for fully revealing the polymorphic structure of cellulose and xylan. NMR relaxation and dipolar order parameters further suggest a sophisticated change of molecular motions in a ctl1 ctl2 double mutant: both cellulose and xylan have become more dynamic on the nanosecond and microsecond timescale, but the motional amplitudes are uniformly small for both polysaccharides.
CONCLUSIONS: By skipping isotopic labeling, the DNP strategy demonstrated here is universally extendable to all lignocellulose materials. This time-efficient method has landed the technical foundation for understanding polysaccharide structure and cell wall assembly in a large variety of plant tissues and species.

Entities:  

Keywords:  Cellulose; Dynamic nuclear polarization (DNP); Natural isotopic abundance; Plant cell wall; Polysaccharide structure; Solid-state NMR; Xylan

Year:  2021        PMID: 33413580      PMCID: PMC7792314          DOI: 10.1186/s13068-020-01858-x

Source DB:  PubMed          Journal:  Biotechnol Biofuels        ISSN: 1754-6834            Impact factor:   6.040


  56 in total

1.  Matrix-free dynamic nuclear polarization enables solid-state NMR 13C-13C correlation spectroscopy of proteins at natural isotopic abundance.

Authors:  Hiroki Takahashi; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Commun (Camb)       Date:  2013-10-21       Impact factor: 6.222

2.  Atomic-Level Structure Characterization of Biomass Pre- and Post-Lignin Treatment by Dynamic Nuclear Polarization-Enhanced Solid-State NMR.

Authors:  Frédéric A Perras; Hao Luo; Ximing Zhang; Nathan S Mosier; Marek Pruski; Mahdi M Abu-Omar
Journal:  J Phys Chem A       Date:  2017-01-17       Impact factor: 2.781

3.  Advanced instrumentation for DNP-enhanced MAS NMR for higher magnetic fields and lower temperatures.

Authors:  Yoh Matsuki; Toshitaka Idehara; Jun Fukazawa; Toshimichi Fujiwara
Journal:  J Magn Reson       Date:  2016-03       Impact factor: 2.229

4.  Pectin-cellulose interactions in the Arabidopsis primary cell wall from two-dimensional magic-angle-spinning solid-state nuclear magnetic resonance.

Authors:  Tuo Wang; Olga Zabotina; Mei Hong
Journal:  Biochemistry       Date:  2012-11-29       Impact factor: 3.162

5.  Direct Determination of Hydroxymethyl Conformations of Plant Cell Wall Cellulose Using 1H Polarization Transfer Solid-State NMR.

Authors:  Pyae Phyo; Tuo Wang; Yu Yang; Hugh O'Neill; Mei Hong
Journal:  Biomacromolecules       Date:  2018-03-30       Impact factor: 6.988

6.  Cellulose Structural Polymorphism in Plant Primary Cell Walls Investigated by High-Field 2D Solid-State NMR Spectroscopy and Density Functional Theory Calculations.

Authors:  Tuo Wang; Hui Yang; James D Kubicki; Mei Hong
Journal:  Biomacromolecules       Date:  2016-05-26       Impact factor: 6.988

7.  Native cellulose: a composite of two distinct crystalline forms.

Authors:  R H Atalla; D L Vanderhart
Journal:  Science       Date:  1984-01-20       Impact factor: 47.728

8.  Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional (13)C solid state nuclear magnetic resonance spectroscopy.

Authors:  Ray Dupree; Thomas J Simmons; Jennifer C Mortimer; Dharmesh Patel; Dinu Iuga; Steven P Brown; Paul Dupree
Journal:  Biochemistry       Date:  2015-03-25       Impact factor: 3.162

9.  Folding of xylan onto cellulose fibrils in plant cell walls revealed by solid-state NMR.

Authors:  Thomas J Simmons; Jenny C Mortimer; Oigres D Bernardinelli; Ann-Christin Pöppler; Steven P Brown; Eduardo R deAzevedo; Ray Dupree; Paul Dupree
Journal:  Nat Commun       Date:  2016-12-21       Impact factor: 14.919

10.  Lignin-polysaccharide interactions in plant secondary cell walls revealed by solid-state NMR.

Authors:  Xue Kang; Alex Kirui; Malitha C Dickwella Widanage; Frederic Mentink-Vigier; Daniel J Cosgrove; Tuo Wang
Journal:  Nat Commun       Date:  2019-01-21       Impact factor: 14.919

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  8 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 2.  Structural Elucidation and Activities of Cordyceps militaris-Derived Polysaccharides: A Review.

Authors:  Miao Miao; Wen-Qian Yu; Yuan Li; Yan-Long Sun; Shou-Dong Guo
Journal:  Front Nutr       Date:  2022-05-31

3.  Saccharide analysis of onion outer epidermal walls.

Authors:  Liza A Wilson; Fabien Deligey; Tuo Wang; Daniel J Cosgrove
Journal:  Biotechnol Biofuels       Date:  2021-03-15       Impact factor: 6.040

4.  Carbohydrate-aromatic interface and molecular architecture of lignocellulose.

Authors:  Alex Kirui; Wancheng Zhao; Fabien Deligey; Hui Yang; Xue Kang; Frederic Mentink-Vigier; Tuo Wang
Journal:  Nat Commun       Date:  2022-01-27       Impact factor: 17.694

Review 5.  Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids.

Authors:  Andrey S Marchev; Liliya V Vasileva; Kristiana M Amirova; Martina S Savova; Zhivka P Balcheva-Sivenova; Milen I Georgiev
Journal:  Cell Mol Life Sci       Date:  2021-08-19       Impact factor: 9.261

Review 6.  Solid State NMR a Powerful Technique for Investigating Sustainable/Renewable Cellulose-Based Materials.

Authors:  Mustapha El Hariri El Nokab; Mohamed H Habib; Yasser A Alassmy; Marwan M Abduljawad; Khalid M Alshamrani; Khaled O Sebakhy
Journal:  Polymers (Basel)       Date:  2022-03-06       Impact factor: 4.329

7.  Structure of In Vitro-Synthesized Cellulose Fibrils Viewed by Cryo-Electron Tomography and 13C Natural-Abundance Dynamic Nuclear Polarization Solid-State NMR.

Authors:  Fabien Deligey; Mark A Frank; Sung Hyun Cho; Alex Kirui; Frederic Mentink-Vigier; Matthew T Swulius; B Tracy Nixon; Tuo Wang
Journal:  Biomacromolecules       Date:  2022-03-26       Impact factor: 6.978

8.  Solid-state NMR analysis of unlabeled fungal cell walls from Aspergillus and Candida species.

Authors:  Liyanage D Fernando; Malitha C Dickwella Widanage; S Chandra Shekar; Frederic Mentink-Vigier; Ping Wang; Sungsool Wi; Tuo Wang
Journal:  J Struct Biol X       Date:  2022-07-19
  8 in total

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