Literature DB >> 33406218

A comprehensive drug repurposing study for COVID19 treatment: novel putative dihydroorotate dehydrogenase inhibitors show association to serotonin-dopamine receptors.

Burak Berber1, Osman Doluca2.   

Abstract

Dihydroorotate dehydrogenase (DHODH) is a key enzyme required for de novo pyrimidine synthesis and it is suggested as a target for COVID19 treatment due to high pyrimidine demand by the virus replication in the infected host cells as well as its proven effect of blocking of cytokine release by the immune cells to prevent inflammation leading to acute respiratory distress. There are a number of clinical trials underway for COVID19 treatment using DHODH inhibitors; however, there are only a small number of known DHODH antagonists available for testing. Here, we have applied a methodology to identify DHODH antagonist candidates, and compared them using in silico target prediction tools. A large set of 7900 FDA-approved and clinical stage drugs obtained from DrugBank were docked against 20 different structures DHODH available in PDB. Drugs were eliminated according to their predicted affinities by Autodock Vina. About 28 FDA-approved and 79 clinical trial ongoing drugs remained. The mode of interaction of these molecules was analyzed by repeating docking using Autodock 4 and DS Visualiser. Finally, the target region predictions of 28 FDA-approved drugs were determined through PASS and SwissTargetPrediction tools. Interestingly, the analysis of in silico target predictions revealed that serotonin-dopamine receptor antagonists could also be potential DHODH inhibitors. Our candidates shared a common attribute, a possible interaction with serotonin-dopamine receptors as well as other oxidoreductases, like DHODH. Moreover, the Bruton Tyrosine Kinase-inhibitor acalabrutunib and serotonin-dopamine receptor inhibitor drugs on our list have been found in the literature that have shown to be effective against Sars-CoV-2, while the path of activity is yet to be identified. Identifying an effective drug that can suppress both inflammation and virus proliferation will play a crucial role in the treatment of COVID. Therefore, we suggest experimental investigation of the 28 FDA-approved drugs on DHODH activity and Sars-CoV-2 virus proliferation. Those who are found experimentally effective can play an important role in COVID19 treatment. Moreover, we suggest investigating COVID19 case conditions in patients using schizophrenia and depression drugs.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  COVID19; DHODH; Sars-CoV-2; molecular docking; target prediction

Mesh:

Substances:

Year:  2021        PMID: 33406218      PMCID: PMC7929379          DOI: 10.1093/bib/bbaa379

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  5 in total

1.  Discovery of potential anti-SARS-CoV-2 drugs based on large-scale screening in vitro and effect evaluation in vivo.

Authors:  Haoran Peng; Cuiling Ding; Liangliang Jiang; Wanda Tang; Yan Liu; Lanjuan Zhao; Zhigang Yi; Hao Ren; Chong Li; Yanhua He; Xu Zheng; Hailin Tang; Zhihui Chen; Zhongtian Qi; Ping Zhao
Journal:  Sci China Life Sci       Date:  2021-12-24       Impact factor: 10.372

2.  DeepKG: An End-to-End Deep Learning-Based Workflow for Biomedical Knowledge Graph Extraction, Optimization and Applications.

Authors:  Zongren Li; Qin Zhong; Jing Yang; Yongjie Duan; Wenjun Wang; Chengkun Wu; Kunlun He
Journal:  Bioinformatics       Date:  2021-11-11       Impact factor: 6.937

3.  The spike-ACE2 binding assay: An in vitro platform for evaluating vaccination efficacy and for screening SARS-CoV-2 inhibitors and neutralizing antibodies.

Authors:  Shuangzhe Zhang; Chunhui Gao; Tuhin Das; Shuhong Luo; Hao Tang; Xinyi Yao; Chih Yun Cho; Jingqiao Lv; Kino Maravillas; Valerie Jones; Xiaofeng Chen; Ruopan Huang
Journal:  J Immunol Methods       Date:  2022-02-23       Impact factor: 2.303

Review 4.  DrugDevCovid19: An Atlas of Anti-COVID-19 Compounds Derived by Computer-Aided Drug Design.

Authors:  Yang Liu; Jianhong Gan; Rongqi Wang; Xiaocong Yang; Zhixiong Xiao; Yang Cao
Journal:  Molecules       Date:  2022-01-21       Impact factor: 4.411

5.  Human/SARS-CoV-2 genome-scale metabolic modeling to discover potential antiviral targets for COVID-19.

Authors:  Feng-Sheng Wang; Ke-Lin Chen; Sz-Wei Chu
Journal:  J Taiwan Inst Chem Eng       Date:  2022-02-15       Impact factor: 5.876

  5 in total

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