| Literature DB >> 33392967 |
Arpit Shukla1,2, Paritosh Parmar2, Gitanjali Kapoor3, Dweipayan Goswami2, Chaitanya Kumar Jha4, Baldev Patel2, Meenu Saraf5.
Abstract
Microbes possess a tremendous potential to interact with their surroundings and have continued to shape the future of all life forms existing on earth. Of all the groups of microbes, viruses are the most nefarious creatures which cannot be solely classified as living or non-living but still pose the greatest threats to the biosphere. Viruses are minuscule, diverse and are probably the only entities that exhibit non-mutualistic association with other lifeforms while retaining their ability to infect and hijack any of the existing living being on the planet. The latest global devastation, caused by novel SARS-CoV-2, is unparalleled in the last century. This review encompasses the mysterious origin of this virus by tracking its lineage, which may help to decode the conundrum of SARS-CoV-2 and shed more light on its epidemiology. The implications and the challenge posed by this virus to the scientific community to the medical community and the economy at large are reflected. Also discussed is the paradigm shift brought upon by the COVID-19 pandemic on the human psyche and their behaviour.Entities:
Keywords: Coronavirus; Lineage of SARS-CoV-2; Microbiology; Pandemic; SARS-CoV-2
Mesh:
Year: 2021 PMID: 33392967 PMCID: PMC7779162 DOI: 10.1007/s11030-020-10167-2
Source DB: PubMed Journal: Mol Divers ISSN: 1381-1991 Impact factor: 3.364
Structural and accessory proteins in SARS-CoV-
2
| Sr. No. | Protein | Molecular weight (kDa) | Role/significance | References |
|---|---|---|---|---|
| Structural proteins | ||||
| 01 | Spike ( | 150 | Provides characteristic club shape, necessary for binding with angiotensin-converting enzyme (ACE2) receptor to enter the host cell. | [ |
| 02. | Envelope ( | 8-12 | Facilitates assembly and release of fresh virus particles from host cell while also being vital for the pathogenesis. | |
| 03 | Membrane ( | 25-30 | Most abundant protein that provides the circular curve shape. | |
| 04 | Nucleocapsid ( | 45–6 | Complex of +single-strand RNA genome and phosphoproteins. | [ |
| 05 | Hemagglutinin-esterase ( | 65 | Enhance S-protein-mediated cell entry and virus spread through the mucosa. | [ |
| Accessory proteins | ||||
| 06 | 3C-like protease or Main protease (3CL | NA | Trimming of viral protein to render their biological activity. | [ |
| 07 | Papain-like protease (PLpro) | NA | Trimming of viral protein to render their biological activity. | [ |
| Non-structural proteins (nsp) | ||||
| 08 | NA | Responsible for replication and packing of this virus | [ | |
| 09 | NA | RNA-dependent RNA polymerase (RdRp) | ||
| 10 | NA | Helicase | ||
| 11 | NA | N-terminal exoribonuclease and C-terminal guanine-N7 methyl transferase | ||
| 12 | NA | Uridylate-specific endoribonuclease | ||
| 13 | NA | 2′-O-methyltransferase | ||
‘NA’ Not available
Fig. 2Phylogenetic analysis to track lineage of SARS-CoV-2 with existing CoV
Fig. 3Genome of SARS-CoV-2
Fig. 1a Structure of SARS-CoV-2 b Life cycle of SARS-CoV-2 in human host
Fig. 4Various diagnostic techniques employed for SARS-CoV-2 detection
Fig. 5Arrows indicate the wave of fear and anxiety in three groups; a infected patients, b Group working closely with infected patients or in epidemic areas (health-care workers, sanitization staffs and administrators), c Group away from the direct exposure, lock down at homes. [Group B shows (i) high anxiety of being infected and becoming A and (ii) fear of going back home and infecting the Group C. It was found that Group C although being less exposed as compared to Group B had high levels of anxiety of turning into Group A.]