Literature DB >> 33387201

A convolutional neural network with transfer learning for automatic discrimination between low and high-grade synovitis: a pilot study.

Vincenzo Venerito1, Orazio Angelini2,3, Gerardo Cazzato4, Giuseppe Lopalco5, Eugenio Maiorano4, Antonietta Cimmino4, Florenzo Iannone1.   

Abstract

Ultrasound-guided synovial tissue biopsy (USSB) may allow personalizing the treatment for patients with inflammatory arthritis. To this end, the quantification of tissue inflammation in synovial specimens can be crucial to adopt proper therapeutic strategies. This study aimed at investigating whether computer vision may be of aid in discriminating the grade of synovitis in patients undergoing USSB. We used a database of 150 photomicrographs of synovium from patients who underwent USSB. For each hematoxylin and eosin (H&E)-stained slide, Krenn's score was calculated. After proper data pre-processing and fine-tuning, transfer learning on a ResNet34 convolutional neural network (CNN) was employed to discriminate between low and high-grade synovitis (Krenn's score < 5 or ≥ 5). We computed test phase metrics, accuracy, precision (true positive/actual results), and recall (true positive/predicted results). The Grad-Cam algorithm was used to highlight the regions in the image used by the model for prediction. We analyzed photomicrographs of specimens from 12 patients with arthritis. The training dataset included n.90 images (n.42 with high-grade synovitis). Validation and test datasets included n.30 (n.14 high-grade synovitis) and n.30 items (n.16 with high-grade synovitis). An accuracy of 100% (precision = 1, recall = 1) was scored in the test phase. Cellularity in the synovial lining and sublining layers was the salient determinant of CNN prediction. This study provides a proof of concept that computer vision with transfer learning is suitable for scoring synovitis. Integrating CNN-based approach into real-life patient management may improve the workflow between rheumatologists and pathologists.
© 2021. Società Italiana di Medicina Interna (SIMI).

Entities:  

Keywords:  Convolutional neural network; Machine learning; Synovitis; Ultrasound-guided synovial biopsy

Year:  2021        PMID: 33387201     DOI: 10.1007/s11739-020-02583-x

Source DB:  PubMed          Journal:  Intern Emerg Med        ISSN: 1828-0447            Impact factor:   3.397


  15 in total

1.  Synovitis score: discrimination between chronic low-grade and high-grade synovitis.

Authors:  V Krenn; L Morawietz; G-R Burmester; R W Kinne; U Mueller-Ladner; B Muller; T Haupl
Journal:  Histopathology       Date:  2006-10       Impact factor: 5.087

Review 2.  Machine learning in rheumatology approaches the clinic.

Authors:  Aridaman Pandit; Timothy R D J Radstake
Journal:  Nat Rev Rheumatol       Date:  2020-02       Impact factor: 20.543

3.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

4.  The 2018 OMERACT Synovial Tissue Biopsy Special Interest Group Report on Standardization of Synovial Biopsy Analysis.

Authors:  Mihir D Wechalekar; Aurélie Najm; Douglas J Veale; Vibeke Strand
Journal:  J Rheumatol       Date:  2019-01-15       Impact factor: 4.666

5.  Computer-assisted validation of the synovitis score.

Authors:  Lars Morawietz; Frank Schaeper; Joerg H Schroeder; Tserenchunt Gansukh; Nachin Baasanjav; Manfred G Krukemeyer; Thorsten Gehrke; Veit Krenn
Journal:  Virchows Arch       Date:  2008-02-19       Impact factor: 4.064

6.  Microscopic measurement of inflammation in synovial tissue: inter-observer agreement for manual quantitative, semiquantitative and computerised digital image analysis.

Authors:  Terence Rooney; Barry Bresnihan; Ulf Andersson; Martina Gogarty; Maarten Kraan; H Ralph Schumacher; Ann-Kristin Ulfgren; Douglas J Veale; Peter P Youssef; Paul P Tak
Journal:  Ann Rheum Dis       Date:  2007-06-29       Impact factor: 19.103

7.  Deep convolutional neural networks for automatic segmentation of thoracic organs-at-risk in radiation oncology - use of non-domain transfer learning.

Authors:  Charles C Vu; Zaid A Siddiqui; Leonid Zamdborg; Andrew B Thompson; Thomas J Quinn; Edward Castillo; Thomas M Guerrero
Journal:  J Appl Clin Med Phys       Date:  2020-06       Impact factor: 2.102

8.  Convolutional neural networks can accurately distinguish four histologic growth patterns of lung adenocarcinoma in digital slides.

Authors:  Arkadiusz Gertych; Zaneta Swiderska-Chadaj; Zhaoxuan Ma; Nathan Ing; Tomasz Markiewicz; Szczepan Cierniak; Hootan Salemi; Samuel Guzman; Ann E Walts; Beatrice S Knudsen
Journal:  Sci Rep       Date:  2019-02-06       Impact factor: 4.379

9.  Explainable Deep Learning for Pulmonary Disease and Coronavirus COVID-19 Detection from X-rays.

Authors:  Luca Brunese; Francesco Mercaldo; Alfonso Reginelli; Antonella Santone
Journal:  Comput Methods Programs Biomed       Date:  2020-06-20       Impact factor: 5.428

10.  Transfer Learning with Deep Convolutional Neural Networks for Classifying Cellular Morphological Changes.

Authors:  Alexander Kensert; Philip J Harrison; Ola Spjuth
Journal:  SLAS Discov       Date:  2019-01-14       Impact factor: 3.341

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  8 in total

1.  A machine learning approach applied to gynecological ultrasound to predict progression-free survival in ovarian cancer patients.

Authors:  Francesca Arezzo; Gennaro Cormio; Daniele La Forgia; Carla Mariaflavia Santarsiero; Michele Mongelli; Claudio Lombardi; Gerardo Cazzato; Ettore Cicinelli; Vera Loizzi
Journal:  Arch Gynecol Obstet       Date:  2022-05-09       Impact factor: 2.493

2.  A Machine Learning Approach to Predict Remission in Patients With Psoriatic Arthritis on Treatment With Secukinumab.

Authors:  Vincenzo Venerito; Giuseppe Lopalco; Anna Abbruzzese; Sergio Colella; Maria Morrone; Sabina Tangaro; Florenzo Iannone
Journal:  Front Immunol       Date:  2022-06-27       Impact factor: 8.786

3.  Deep Learning-Based Classification of Inflammatory Arthritis by Identification of Joint Shape Patterns-How Neural Networks Can Tell Us Where to "Deep Dive" Clinically.

Authors:  Lukas Folle; David Simon; Koray Tascilar; Gerhard Krönke; Anna-Maria Liphardt; Andreas Maier; Georg Schett; Arnd Kleyer
Journal:  Front Med (Lausanne)       Date:  2022-03-10

4.  Validity of Machine Learning in Predicting Giant Cell Arteritis Flare After Glucocorticoids Tapering.

Authors:  Vincenzo Venerito; Giacomo Emmi; Luca Cantarini; Pietro Leccese; Marco Fornaro; Claudia Fabiani; Nancy Lascaro; Laura Coladonato; Irene Mattioli; Giulia Righetti; Danilo Malandrino; Sabina Tangaro; Adalgisa Palermo; Maria Letizia Urban; Edoardo Conticini; Bruno Frediani; Florenzo Iannone; Giuseppe Lopalco
Journal:  Front Immunol       Date:  2022-04-05       Impact factor: 8.786

5.  MIXTURE of human expertise and deep learning-developing an explainable model for predicting pathological diagnosis and survival in patients with interstitial lung disease.

Authors:  Wataru Uegami; Andrey Bychkov; Mutsumi Ozasa; Kazuki Uehara; Kensuke Kataoka; Takeshi Johkoh; Yasuhiro Kondoh; Hidenori Sakanashi; Junya Fukuoka
Journal:  Mod Pathol       Date:  2022-02-23       Impact factor: 8.209

Review 6.  The Use and Utility of Machine Learning in Achieving Precision Medicine in Systemic Sclerosis: A Narrative Review.

Authors:  Francesco Bonomi; Silvia Peretti; Gemma Lepri; Vincenzo Venerito; Edda Russo; Cosimo Bruni; Florenzo Iannone; Sabina Tangaro; Amedeo Amedei; Serena Guiducci; Marco Matucci Cerinic; Silvia Bellando Randone
Journal:  J Pers Med       Date:  2022-07-23

7.  Dermatopathology of Malignant Melanoma in the Era of Artificial Intelligence: A Single Institutional Experience.

Authors:  Gerardo Cazzato; Alessandro Massaro; Anna Colagrande; Teresa Lettini; Sebastiano Cicco; Paola Parente; Eleonora Nacchiero; Lucia Lospalluti; Eliano Cascardi; Giuseppe Giudice; Giuseppe Ingravallo; Leonardo Resta; Eugenio Maiorano; Angelo Vacca
Journal:  Diagnostics (Basel)       Date:  2022-08-15

Review 8.  Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges.

Authors:  Maxwell A Konnaris; Matthew Brendel; Mark Alan Fontana; Miguel Otero; Lionel B Ivashkiv; Fei Wang; Richard D Bell
Journal:  Arthritis Res Ther       Date:  2022-03-11       Impact factor: 5.156

  8 in total

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