Literature DB >> 33386866

Paenibacillus puerhi sp. nov., isolated from the rhizosphere soil of Pu-erh tea plants (Camellia sinensis var. assamica).

Rui-Juan Yang1,2,3,4, Qiao-Mei Wang3,4, Xing-Hua Wang5, Wen-Jie Zhang3,4, Li Zhuang3,4, Xuan-Jun Wang1,6,7, Liang Yan8,9, Jie Lv10, Jun Sheng11,12.   

Abstract

An aerobic, Gram-staining-positive, rod-shaped, endospore-forming and motile bacterial strain, designated SJY2T, was isolated from the rhizosphere soil of tea plants (Camellia sinensis var. assamica) collected in the organic tea garden of the Jingmai Pu-erh tea district in Pu'er city, Yunnan, southwest China. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belonged to the genus Paenibacillus. The closest phylogenetic relative was Paenibacillus filicis DSM 23916T (98.1% similarity). The major fatty acids (> 10% of the total fatty acids) were anteiso-C15:0 and isoC16:0. The major respiratory quinone was MK-7 and the major polar lipid was diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylmonomethylethanolamine. The peptidoglycan contained glutamic acid, serine, alanine and meso-diaminopimelic acid. Genome sequencing revealed a genome size of 6.71 Mbp and a G + C content of 53.1%. Pairwise determined whole genome average nucleotide identity (gANI) values and digital DNA-DNA hybridization (dDDH) values suggested that strain SJY2T represents a new species, for which we propose the name Paenibacillus puerhi sp. nov. with the type strain SJY2T (= CGMCC 1.17156T = KCTC 43242T).

Entities:  

Keywords:  Genome; Novel species; Paenibacillus; Polyphasic taxonomy; Rhizosphere soil

Year:  2021        PMID: 33386866     DOI: 10.1007/s00203-020-02135-z

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


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6.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

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7.  Paenibacillus filicis sp. nov., isolated from the rhizosphere of the fern.

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8.  SOAP: short oligonucleotide alignment program.

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10.  Paenibacillus lupini sp. nov., isolated from nodules of Lupinus albus.

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2.  Paenibacillus alkalitolerans sp. nov., a bacterium isolated from a salt lake of Turpan City in Xinjiang Province, north-west China.

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3.  Effects of Lightning on Rhizosphere Soil Properties, Bacterial Communities, and Active Components of Camellia sinensis var. assamica.

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