Literature DB >> 33372276

H-MAGMA, inheriting a shaky statistical foundation, yields excess false positives.

Ronald Yurko1, Kathryn Roeder1,2, Bernie Devlin3, Max G'Sell1.   

Abstract

Year:  2020        PMID: 33372276     DOI: 10.1111/ahg.12412

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


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  9 in total

1.  A simplified protocol for performing MAGMA/H-MAGMA gene set analysis utilizing high-performance computing environments.

Authors:  Siwei Zhang
Journal:  STAR Protoc       Date:  2022-01-11

Review 2.  Advances in profiling chromatin architecture shed light on the regulatory dynamics underlying brain disorders.

Authors:  Brandon M Pratt; Hyejung Won
Journal:  Semin Cell Dev Biol       Date:  2021-09-03       Impact factor: 7.727

3.  An approach to gene-based testing accounting for dependence of tests among nearby genes.

Authors:  Ronald Yurko; Kathryn Roeder; Bernie Devlin; Max G'Sell
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 13.994

4.  New insights into the genetic etiology of Alzheimer's disease and related dementias.

Authors:  Céline Bellenguez; Fahri Küçükali; Iris E Jansen; Luca Kleineidam; Sonia Moreno-Grau; Najaf Amin; Adam C Naj; Rafael Campos-Martin; Mikko Hiltunen; Kristel Sleegers; Gerard D Schellenberg; Cornelia M van Duijn; Rebecca Sims; Wiesje M van der Flier; Agustín Ruiz; Alfredo Ramirez; Jean-Charles Lambert; Benjamin Grenier-Boley; Victor Andrade; Peter A Holmans; Anne Boland; Vincent Damotte; Sven J van der Lee; Marcos R Costa; Teemu Kuulasmaa; Qiong Yang; Itziar de Rojas; Joshua C Bis; Amber Yaqub; Ivana Prokic; Julien Chapuis; Shahzad Ahmad; Vilmantas Giedraitis; Dag Aarsland; Pablo Garcia-Gonzalez; Carla Abdelnour; Emilio Alarcón-Martín; Daniel Alcolea; Montserrat Alegret; Ignacio Alvarez; Victoria Álvarez; Nicola J Armstrong; Anthoula Tsolaki; Carmen Antúnez; Ildebrando Appollonio; Marina Arcaro; Silvana Archetti; Alfonso Arias Pastor; Beatrice Arosio; Lavinia Athanasiu; Henri Bailly; Nerisa Banaj; Miquel Baquero; Sandra Barral; Alexa Beiser; Ana Belén Pastor; Jennifer E Below; Penelope Benchek; Luisa Benussi; Claudine Berr; Céline Besse; Valentina Bessi; Giuliano Binetti; Alessandra Bizarro; Rafael Blesa; Mercè Boada; Eric Boerwinkle; Barbara Borroni; Silvia Boschi; Paola Bossù; Geir Bråthen; Jan Bressler; Catherine Bresner; Henry Brodaty; Keeley J Brookes; Luis Ignacio Brusco; Dolores Buiza-Rueda; Katharina Bûrger; Vanessa Burholt; William S Bush; Miguel Calero; Laura B Cantwell; Geneviève Chene; Jaeyoon Chung; Michael L Cuccaro; Ángel Carracedo; Roberta Cecchetti; Laura Cervera-Carles; Camille Charbonnier; Hung-Hsin Chen; Caterina Chillotti; Simona Ciccone; Jurgen A H R Claassen; Christopher Clark; Elisa Conti; Anaïs Corma-Gómez; Emanuele Costantini; Carlo Custodero; Delphine Daian; Maria Carolina Dalmasso; Antonio Daniele; Efthimios Dardiotis; Jean-François Dartigues; Peter Paul de Deyn; Katia de Paiva Lopes; Lot D de Witte; Stéphanie Debette; Jürgen Deckert; Teodoro Del Ser; Nicola Denning; Anita DeStefano; Martin Dichgans; Janine Diehl-Schmid; Mónica Diez-Fairen; Paolo Dionigi Rossi; Srdjan Djurovic; Emmanuelle Duron; Emrah Düzel; Carole Dufouil; Gudny Eiriksdottir; Sebastiaan Engelborghs; Valentina Escott-Price; Ana Espinosa; Michael Ewers; Kelley M Faber; Tagliavini Fabrizio; Sune Fallgaard Nielsen; David W Fardo; Lucia Farotti; Chiara Fenoglio; Marta Fernández-Fuertes; Raffaele Ferrari; Catarina B Ferreira; Evelyn Ferri; Bertrand Fin; Peter Fischer; Tormod Fladby; Klaus Fließbach; Bernard Fongang; Myriam Fornage; Juan Fortea; Tatiana M Foroud; Silvia Fostinelli; Nick C Fox; Emlio Franco-Macías; María J Bullido; Ana Frank-García; Lutz Froelich; Brian Fulton-Howard; Daniela Galimberti; Jose Maria García-Alberca; Pablo García-González; Sebastian Garcia-Madrona; Guillermo Garcia-Ribas; Roberta Ghidoni; Ina Giegling; Giaccone Giorgio; Alison M Goate; Oliver Goldhardt; Duber Gomez-Fonseca; Antonio González-Pérez; Caroline Graff; Giulia Grande; Emma Green; Timo Grimmer; Edna Grünblatt; Michelle Grunin; Vilmundur Gudnason; Tamar Guetta-Baranes; Annakaisa Haapasalo; Georgios Hadjigeorgiou; Jonathan L Haines; Kara L Hamilton-Nelson; Harald Hampel; Olivier Hanon; John Hardy; Annette M Hartmann; Lucrezia Hausner; Janet Harwood; Stefanie Heilmann-Heimbach; Seppo Helisalmi; Michael T Heneka; Isabel Hernández; Martin J Herrmann; Per Hoffmann; Clive Holmes; Henne Holstege; Raquel Huerto Vilas; Marc Hulsman; Jack Humphrey; Geert Jan Biessels; Xueqiu Jian; Charlotte Johansson; Gyungah R Jun; Yuriko Kastumata; John Kauwe; Patrick G Kehoe; Lena Kilander; Anne Kinhult Ståhlbom; Miia Kivipelto; Anne Koivisto; Johannes Kornhuber; Mary H Kosmidis; Walter A Kukull; Pavel P Kuksa; Brian W Kunkle; Amanda B Kuzma; Carmen Lage; Erika J Laukka; Lenore Launer; Alessandra Lauria; Chien-Yueh Lee; Jenni Lehtisalo; Ondrej Lerch; Alberto Lleó; William Longstreth; Oscar Lopez; Adolfo Lopez de Munain; Seth Love; Malin Löwemark; Lauren Luckcuck; Kathryn L Lunetta; Yiyi Ma; Juan Macías; Catherine A MacLeod; Wolfgang Maier; Francesca Mangialasche; Marco Spallazzi; Marta Marquié; Rachel Marshall; Eden R Martin; Angel Martín Montes; Carmen Martínez Rodríguez; Carlo Masullo; Richard Mayeux; Simon Mead; Patrizia Mecocci; Miguel Medina; Alun Meggy; Shima Mehrabian; Silvia Mendoza; Manuel Menéndez-González; Pablo Mir; Susanne Moebus; Merel Mol; Laura Molina-Porcel; Laura Montrreal; Laura Morelli; Fermin Moreno; Kevin Morgan; Thomas Mosley; Markus M Nöthen; Carolina Muchnik; Shubhabrata Mukherjee; Benedetta Nacmias; Tiia Ngandu; Gael Nicolas; Børge G Nordestgaard; Robert Olaso; Adelina Orellana; Michela Orsini; Gemma Ortega; Alessandro Padovani; Caffarra Paolo; Goran Papenberg; Lucilla Parnetti; Florence Pasquier; Pau Pastor; Gina Peloso; Alba Pérez-Cordón; Jordi Pérez-Tur; Pierre Pericard; Oliver Peters; Yolande A L Pijnenburg; Juan A Pineda; Gerard Piñol-Ripoll; Claudia Pisanu; Thomas Polak; Julius Popp; Danielle Posthuma; Josef Priller; Raquel Puerta; Olivier Quenez; Inés Quintela; Jesper Qvist Thomassen; Alberto Rábano; Innocenzo Rainero; Farid Rajabli; Inez Ramakers; Luis M Real; Marcel J T Reinders; Christiane Reitz; Dolly Reyes-Dumeyer; Perry Ridge; Steffi Riedel-Heller; Peter Riederer; Natalia Roberto; Eloy Rodriguez-Rodriguez; Arvid Rongve; Irene Rosas Allende; Maitée Rosende-Roca; Jose Luis Royo; Elisa Rubino; Dan Rujescu; María Eugenia Sáez; Paraskevi Sakka; Ingvild Saltvedt; Ángela Sanabria; María Bernal Sánchez-Arjona; Florentino Sanchez-Garcia; Pascual Sánchez Juan; Raquel Sánchez-Valle; Sigrid B Sando; Chloé Sarnowski; Claudia L Satizabal; Michela Scamosci; Nikolaos Scarmeas; Elio Scarpini; Philip Scheltens; Norbert Scherbaum; Martin Scherer; Matthias Schmid; Anja Schneider; Jonathan M Schott; Geir Selbæk; Davide Seripa; Manuel Serrano; Jin Sha; Alexey A Shadrin; Olivia Skrobot; Susan Slifer; Gijsje J L Snijders; Hilkka Soininen; Vincenzo Solfrizzi; Alina Solomon; Yeunjoo Song; Sandro Sorbi; Oscar Sotolongo-Grau; Gianfranco Spalletta; Annika Spottke; Alessio Squassina; Eystein Stordal; Juan Pablo Tartan; Lluís Tárraga; Niccolo Tesí; Anbupalam Thalamuthu; Tegos Thomas; Giuseppe Tosto; Latchezar Traykov; Lucio Tremolizzo; Anne Tybjærg-Hansen; Andre Uitterlinden; Abbe Ullgren; Ingun Ulstein; Sergi Valero; Otto Valladares; Christine Van Broeckhoven; Jeffery Vance; Badri N Vardarajan; Aad van der Lugt; Jasper Van Dongen; Jeroen van Rooij; John van Swieten; Rik Vandenberghe; Frans Verhey; Jean-Sébastien Vidal; Jonathan Vogelgsang; Martin Vyhnalek; Michael Wagner; David Wallon; Li-San Wang; Ruiqi Wang; Leonie Weinhold; Jens Wiltfang; Gill Windle; Bob Woods; Mary Yannakoulia; Habil Zare; Yi Zhao; Xiaoling Zhang; Congcong Zhu; Miren Zulaica; Lindsay A Farrer; Bruce M Psaty; Mohsen Ghanbari; Towfique Raj; Perminder Sachdev; Karen Mather; Frank Jessen; M Arfan Ikram; Alexandre de Mendonça; Jakub Hort; Magda Tsolaki; Margaret A Pericak-Vance; Philippe Amouyel; Julie Williams; Ruth Frikke-Schmidt; Jordi Clarimon; Jean-François Deleuze; Giacomina Rossi; Sudha Seshadri; Ole A Andreassen; Martin Ingelsson
Journal:  Nat Genet       Date:  2022-04-04       Impact factor: 41.307

5.  EPIC: Inferring relevant cell types for complex traits by integrating genome-wide association studies and single-cell RNA sequencing.

Authors:  Rujin Wang; Dan-Yu Lin; Yuchao Jiang
Journal:  PLoS Genet       Date:  2022-06-16       Impact factor: 6.020

Review 6.  Pathway analysis for genome-wide genetic variation data: Analytic principles, latest developments, and new opportunities.

Authors:  Micah Silberstein; Nicholas Nesbit; Jacquelyn Cai; Phil H Lee
Journal:  J Genet Genomics       Date:  2021-02-26       Impact factor: 4.275

7.  Pleiotropic effects of telomere length loci with brain morphology and brain tissue expression.

Authors:  Gita A Pathak; Frank R Wendt; Daniel F Levey; Adam P Mecca; Christopher H van Dyck; Joel Gelernter; Renato Polimanti
Journal:  Hum Mol Genet       Date:  2021-06-26       Impact factor: 6.150

8.  Comprehensive analyses of RNA-seq and genome-wide data point to enrichment of neuronal cell type subsets in neuropsychiatric disorders.

Authors:  B D Lin; J J Luykx; M Olislagers; K Rademaker; R A H Adan
Journal:  Mol Psychiatry       Date:  2021-11-01       Impact factor: 13.437

9.  Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders.

Authors:  Benxia Hu; Hyejung Won; Won Mah; Royce B Park; Bibi Kassim; Keeley Spiess; Alexey Kozlenkov; Cheynna A Crowley; Sirisha Pochareddy; Yun Li; Stella Dracheva; Nenad Sestan; Schahram Akbarian; Daniel H Geschwind
Journal:  Nat Commun       Date:  2021-06-25       Impact factor: 17.694

  9 in total

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