| Literature DB >> 33371777 |
Shuai Chen1, Yi Wei1, Hanyang Liu1, Yu Gong1, Yan Zhou1, Haojun Yang1, Liming Tang1.
Abstract
Collagen type X alpha 1 (COL10A1) is a member of the collagen family and the main matrix component. However, COL10A1 expression and prognosis relationship remains unclear in gastric cancer (GC). Through the analysis of database of Oncomine, the Cancer Genome Atlas (TCGA) as well as the Gene Expression Omnibus (GEO), in contrast to the tissue of normal gastric, COL10A1 in gastric cancer, had been upregulated. The high expression of COL10A1 was obviously related to T stage (P = 0.025) and lymph node metastasis (P = 0.025). It has been illustrated by the analysis of logistic regression that COL10A1's heightened expression in gastric cancer had been essentially linked with pathological stage, tumor differentiation, and T classification. The Kaplan-Meier curve in the Kaplan-Meier plotter database (P = 0.0371) and GSE84437 (P = 0.002) indicate that patients with high COL10A1 expression possess poor prognosis, specifically GC patients with lymph node metastasis have it. TCGA's Multivariate analysis (P = 0.025) and GSE84437 dataset (P = 0.034) show that high expression COL10A1 is a key independent predictor of poor overall survival. Searching KEGG pathway enrichment by GSEA, the results suggested that 29 pathways were enriched. qRT-PCR technique was used for verification of the COL10A1's high expression in gastric cancer in contrast to the normal gastric tissues. In conclusion, COL10A1 is of great importance in predicting the survival rate of GC patients.Entities:
Keywords: COL10A1; Collagen type X alpha 1; bioinformatics; biomarker; gastric cancer; prognosis
Year: 2021 PMID: 33371777 PMCID: PMC8291830 DOI: 10.1080/21655979.2020.1864912
Source DB: PubMed Journal: Bioengineered ISSN: 2165-5979 Impact factor: 3.269
Characteristics of patients with gastric cancer in GSE84437 dataset
| Characteristics | Variable | Patients (433) | Percentages (%) |
|---|---|---|---|
| Age | <65 years | 267 | 61.66 |
| Gender | Male | 296 | 68.36 |
| T classification | T1 | 11 | 2.54 |
| N classification | N0 | 80 | 18.48 |
| Vital status | Alive | 224 | 51.73 |
Figure 1.Expression level of COL10A1 in GC and its relationship with pathological parameters. The mRNA expression of COL10A1 in GC (a), diffuse gastric adenocarcinoma (b) and gastric intestinal-type adenocarcinoma (c, d) compared to normal individuals derived from the Oncomine database. Comparison of COL10A1 expression between GC tissues and adjacent nontumor tissue base on TCGA data (e). The expression of COL10A1 is grouped by tumor differentiation (f), pathological stage (g) and T stage (h)
Relationship between COL10A1 expression and clinicopathological parameters in gastric cancer
| Clinicopathological parameters | COL10A1 expression | | | |
|---|---|---|---|---|
| Hight ( | Low ( | Total | ||
| Age | 66(49.6) | 67(50.4) | ||
| Gender | 102(51.5) | 96(48.5) | 198 | 0.611 |
| Grade | 50(43.5) | 65(56.5) | 115 | 0.093 |
| Pathological stage | 75(51.7) | 70(48.3) | 145 | 0.689 |
| T classifification | 31(38.8) | 49(61.2) | 80 | 0.025 |
| Lymph node metastasis | 55(54.5) | 46(45.5) | 101 | 0.025 |
| Distant metastasis | 148(50.0) | 148(50.0) | 296 | 1 |
COL10A1 expression correlated with clinicopathological parameters
| Clinicopathological parameters | Total ( | Odds ratio in COL10A1 expression | |
|---|---|---|---|
| Age | 371 | 1.035(0.687–1.559) | 0.870 |
| Gender | 375 | 1.088(0.713–1.662) | 0.694 |
| Tumor differentiation | 366 | 1.543(1.015–2.356) | 0.043 |
| Pathological stage | 164 | 3.106 (1.577–6.307) | 0.001 |
| T classification | 99 | 14.727(2.827–271.308) | 0.011 |
| Lymph node metastasis | 357 | 0.870(0.555–1.363) | 0.543 |
| Distant metastasis | 355 | 0.923(0.404–2.094) | 0.847 |
Figure 2.Survival analysis, univariate and multivariate analysis. Kaplan-Meier curve of the relationship between COL10A1 mRNA expression and the prognosis of GC patients based on Kaplan-Meier plots database (a) and GSE84437 dataset (d). Univariate and multivariate analysis of COL10A1 expression and its correlation in patients with GC base on TCGA data (b, c) and GSE84437 dataset (e, f)
Correlation of COL10A1 mRNA expression and clinical prognosis in gastric cancer
| | Overall survival | Post progression survival |
|---|---|---|
| N HR | N HR | |
| Sex | 236 1.94(1.32–2.77) 0.00047 | 149 1.48(0.95–2.29) 0.081 |
| Stage | 69 0.11(0.02–0.49) 0.00046 | 31 0.08(0.01–0.72) 0.0051 |
| Stage T | 14 - - | 3 - - |
| Stage N | 76 0.49(0.21–1.12) 0.085 | 41 0.35(0.11–1.09) 0.059 |
| Stage M | 444 1.74(1.30–2.33) 0.00015 | 342 1.51(1.12–2.04) 0.0068 |
| Lauren classification | 320 2.20(1.59–3.04) 9.4e-07 | 192 1.66(1.09–2.51) 0.0161 |
| Differentiation | 165 2.08(1.27–3.40) 0.0029 | 49 1.36(0.72–2.58) 0.3428 |
| HER2 status | 532 1.22(0.96–1.56) 0.11 | 334 1.19(0.89–1.59) 0.24 |
Figure 3.GSEA analysis and experimental verification. (a) A combined enrichment plot has been obtained from the analysis of the enrichment of the gene series, including the enrichment fraction and gene series (top 10 terms). (b) The expression level of COL10A1 was higher than that of GES-1 in three kinds of GC cells (AGS, SGC-7901 and MGC-803) (*P < 0.05, **P < 0.01). (c) qRT-PCR analysis of COL10A1 mRNA expression in 30 pairs of GC tissues and adjacent nontumor tissues