| Literature DB >> 34506251 |
Yunxia Zhao1, Shangshang Hu2, Jinyan Zhang3,4, Zhaogen Cai5, Shuanhu Wang6, Mulin Liu6, Jing Dai3, Yu Gao3,4.
Abstract
To investigate the potential role of GXYLT2 (glucoside xylosyltransferase 2) in gastric cancer (GC), the TCGA (The Cancer Genome Atlas) database and Gene Expression Omnibus (GEO) dataset were used to evaluate GXYLT2 mRNA expression, and the standardized mean difference and diagnostic value were comprehensively assessed. Survival analysis and univariate/multivariate cox regression analysis were performed to evaluate the prognostic value of GXYLT2 in GC patients. The correlation between GXYLT2 and tumor immune cells was identified by using the CIBERSORT algorithm. The results showed that GXYLT2 expression level was significantly increased in GC tissues. GXYLT2 expression was significantly correlated with the grade, stage, and invasion depth of gastric cancer. Overall survival was reduced in the high GXYLT2 expression group. Univariate and multivariate Cox regression analyses showed that GXYLT2 was a reliable prognostic factor. GSEA showed that GXYLT2 might participate in the development of GC through tumor-related pathways. The expression of GXYLT2 was positively correlated with 5 tumor-infiltrating immune cells (resting dendritic cells, m2 macrophages, monocytes, active NK cells and resting mast cells), and was negatively correlated with 6 tumor-infiltrating immune cells (plasma cells, activated memory CD4 T cells, resting NK cells, activated dendritic cells, and activated neutrophils and mast cells). Through cell experiment verification, GXYLT2 expression level in gastric cancer cells was found to be high, which verified the results from the bioinformatics analysis. Furthermore, immunohistochemical staining results also showed that GC tissues had positive GXYLT2 expression. In summary, GXYLT2 might be a potential diagnostic and prognostic biomarker for gastric cancer.Entities:
Keywords: Glucoside xylosyltransferase 2 (GXYLT2); bioinformatics analysis; gastric cancer (GC); immune cell infiltration; overall survival; prognosis
Mesh:
Substances:
Year: 2021 PMID: 34506251 PMCID: PMC8806449 DOI: 10.1080/21655979.2021.1967067
Source DB: PubMed Journal: Bioengineered ISSN: 2165-5979 Impact factor: 3.269
The main information of GC expression analyses from TCGA data and GEO datasets
| Data set | Platform | # GC | # Normal | Country |
|---|---|---|---|---|
| GSE13195 | GPL5175 | 25 | 25 | China |
| GSE13911 | GPL570 | 38 | 31 | Italy |
| GSE19826 | GPL570 | 12 | 12 | China |
| GSE27342 | GPL5175 | 80 | 80 | USA |
| GSE33335 | GPL5175 | 25 | 25 | China |
| GSE79973 | GPL570 | 10 | 10 | China |
| GSE63089 | GPL5175 | 45 | 45 | China |
| GSE64951 | GPL570 | 63 | 31 | USA |
| GSE65801 | GPL14550 | 32 | 32 | China |
| GSE54129 | GPL570 | 111 | 21 | China |
| GSE84787 | GPL17077 | 10 | 10 | China |
| GSE112369 | GPL15207 | 36 | 17 | Japan |
| GSE118916 | GPL15207 | 15 | 15 | China |
| TCGA | NR | 375 | 32 | USA |
Figure 1.The expression level of GXYLT2 was significantly up-regulated in gastric cancer samples
Figure 2.GXYLT2 could be used as a diagnostic marker for patients with gastric cancer based on the results of analysis of the diagnostic values
Relationships between GXYLT2expression and clinicopathological parameters in GC patients
| Clinicopathological | GXYLT2 expression | P-value | |
|---|---|---|---|
| parameters | High(n = 146) | Low (n = 147) | |
| Age | |||
| <65 | 68 | 58 | 0.239 |
| ≥65 | 78 | 89 | |
| Gender | |||
| Female | 62 | 54 | 0.341 |
| Male | 84 | 93 | |
| Tumor grade | |||
| G1 & G2 | 44 | 63 | 0.029 |
| G3 | 102 | 84 | |
| Pathological stage | |||
| I & II | 56 | 79 | 0.036 |
| III & IV | 85 | 73 | |
| T classification | |||
| T1-T2 | 29 | 47 | 0.023 |
| T3-T4 | 117 | 100 | |
| Distant metastasis | |||
| M0 | 137 | 136 | 0.817 |
| M1 | 9 | 11 | |
| Lymph node metastasis | |||
| N0-N1 | 81 | 87 | 0.522 |
| N2-N3 | 65 | 60 | |
Figure 3.GXYLT2 might serve as a prognostic marker in patients with GC
Figure 4.GSEA identified GXYLT2-related tumor pathways and immune regulatory. The terms related to tumor pathways were ‘ECM Receptor Interaction,’ ‘Focal Adhesion,’ ‘Wnt Signaling Pathway,’ ‘Gap Junction,’ and ‘Cell Adhesion Molecules (CAMs)’. The terms related to immunity were ‘Complement and Coagulation Cascades,’ ‘Cytokine Receptor Interaction,’ ‘TGF Beta Signaling Pathway,’ and ‘Leukocyte Transendothelial Migration’
Figure 5.Identification of differences and correlation between the GXYLT2 expression level and tumor-infiltrating immune cells in in GC patients
Figure 6.Verification of upregulation of GXYLT2 expression levels in GC by qRT-PCR and Immunohistochemistry test. (a)The mRNA levels of GXYLT2 in normal gastric cell and gastric cancer cell lines. (b) Representative images of GXYLT2 immunohistochemistry in GC tissue