Literature DB >> 33362265

Random regression for modeling yield genetic trajectories in Jatropha curcas breeding.

Marco Antônio Peixoto1, Rodrigo Silva Alves2, Igor Ferreira Coelho1, Jeniffer Santana Pinto Coelho Evangelista1, Marcos Deon Vilela de Resende3, João Romero do Amaral Santos de Carvalho Rocha1, Fabyano Fonseca E Silva1, Bruno Gâlveas Laviola4, Leonardo Lopes Bhering1.   

Abstract

Random regression models (RRM) are a powerful tool to evaluate genotypic plasticity over time. However, to date, RRM remains unexplored for the analysis of repeated measures in Jatropha curcas breeding. Thus, the present work aimed to apply the random regression technique and study its possibilities for the analysis of repeated measures in Jatropha curcas breeding. To this end, the grain yield (GY) trait of 730 individuals of 73 half-sib families was evaluated over six years. Variance components were estimated by restricted maximum likelihood, genetic values were predicted by best linear unbiased prediction and RRM were fitted through Legendre polynomials. The best RRM was selected by Bayesian information criterion. According to the likelihood ratio test, there was genetic variability among the Jatropha curcas progenies; also, the plot and permanent environmental effects were statistically significant. The variance components and heritability estimates increased over time. Non-uniform trajectories were estimated for each progeny throughout the measures, and the area under the trajectories distinguished the progenies with higher performance. High accuracies were found for GY in all harvests, which indicates the high reliability of the results. Moderate to strong genetic correlation was observed across pairs of harvests. The genetic trajectories indicated the existence of genotype × measurement interaction, once the trajectories crossed, which implies a different ranking in each year. Our results suggest that RRM can be efficiently applied for genetic selection in Jatropha curcas breeding programs.

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Year:  2020        PMID: 33362265      PMCID: PMC7757908          DOI: 10.1371/journal.pone.0244021

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  8 in total

1.  Best linear unbiased estimation and prediction under a selection model.

Authors:  C R Henderson
Journal:  Biometrics       Date:  1975-06       Impact factor: 2.571

2.  Analysis of the inheritance, selection and evolution of growth trajectories.

Authors:  M Kirkpatrick; D Lofsvold; M Bulmer
Journal:  Genetics       Date:  1990-04       Impact factor: 4.562

3.  Variation in reaction norms: Statistical considerations and biological interpretation.

Authors:  Michael B Morrissey; Maartje Liefting
Journal:  Evolution       Date:  2016-08-21       Impact factor: 3.694

4.  Biodiesel production from crude Jatropha curcas L. seed oil with a high content of free fatty acids.

Authors:  Hanny Johanes Berchmans; Shizuko Hirata
Journal:  Bioresour Technol       Date:  2007-05-24       Impact factor: 9.642

5.  Genotype by environment interaction for tick resistance of Hereford and Braford beef cattle using reaction norm models.

Authors:  Rodrigo R Mota; Robert J Tempelman; Paulo S Lopes; Ignacio Aguilar; Fabyano F Silva; Fernando F Cardoso
Journal:  Genet Sel Evol       Date:  2016-01-14       Impact factor: 4.297

6.  Genetic insights into elephantgrass persistence for bioenergy purpose.

Authors:  João Romero do Amaral Santos de Carvalho Rocha; Tiago de Souza Marçal; Felipe Vicentino Salvador; Adriel Carlos da Silva; Juarez Campolina Machado; Pedro Crescêncio Souza Carneiro
Journal:  PLoS One       Date:  2018-09-13       Impact factor: 3.240

7.  Bayesian Multi-Trait Analysis Reveals a Useful Tool to Increase Oil Concentration and to Decrease Toxicity in Jatropha curcas L.

Authors:  Vinícius Silva Junqueira; Leonardo de Azevedo Peixoto; Bruno Galvêas Laviola; Leonardo Lopes Bhering; Simone Mendonça; Tania da Silveira Agostini Costa; Rosemar Antoniassi
Journal:  PLoS One       Date:  2016-06-09       Impact factor: 3.240

8.  Deciphering Hybrid Larch Reaction Norms Using Random Regression.

Authors:  Alexandre Marchal; Carl D Schlichting; Rémy Gobin; Philippe Balandier; Frédéric Millier; Facundo Muñoz; Luc E Pâques; Leopoldo Sánchez
Journal:  G3 (Bethesda)       Date:  2019-01-09       Impact factor: 3.154

  8 in total

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