| Literature DB >> 33355808 |
Reşat Dikme1, Mahmut Padak1, Mesut Işık2, İsmail Koyuncu3, Ebru Temiz4, Mehmet Salih Aydın5, Ömer Göç1.
Abstract
INTRODUCTION: The growth Stimulation expressed gene 2 (ST2) (or interleukin 1 receptor-like 1, also known as IL1RL1) is considered a biomarker of poor prognosis in cardiovascular diseases. The aims of this study are to investigate ST2 in the pericardial fluid (PF) of coronary artery disease patients and to contribute to the understanding of the pathophysiology of coronary artery disease.Entities:
Keywords: Biomarkers; Coronary Artery Disease; IL1RL1 protein, human; Pericardial Fluid; Prognosis; Real-Time Polymerase Chain Reaction
Mesh:
Substances:
Year: 2021 PMID: 33355808 PMCID: PMC8597614 DOI: 10.21470/1678-9741-2020-0317
Source DB: PubMed Journal: Braz J Cardiovasc Surg ISSN: 0102-7638
Fig. 1Cardioprotective relationship of interleukin 33 (IL33) with membrane-bound growth STimulation expressed gene 2 (ST2L) and blocking with soluble growth STimulation expressed gene 2 (sST2). DNA=deoxyribonucleic acid.
Reverse transcriptase PCR mixture for obtaining cDNA from mRNA.
| Ingredients | Amount |
|---|---|
| RNA | 500 ng/µl |
| Buffer GE (removal of genomic DNA) | 2 µl |
| Ribonuclease-free water | Adjusted to total 10µl |
cDNA=complementary deoxyribonucleic acid;
DNA=deoxyribonucleic acid; mRNA=messenger ribonucleic acid; GE= Genomic elution; PCR=polymerase chain reaction;
RNA=ribonucleic acid
Primary pool mix for ST2 gene expression.
| For 1 sample | |
|---|---|
| 5´ miScript master mix | 12.5 µl |
| Taq polimeraz | 0.5 µl (250 unit) |
| Primer pool | 7.5 pmol/µl |
|
| |
ST2=growth Stimulation expressed gene 2
Routine PCR protocol for ST2 expression level.
| Temperature (oC) | Time | |
|---|---|---|
| 95 | 10 minutes | |
| 94 | 15 seconds | }12 times |
| 60 | 2 minutes | |
| 4 |
PCR=polymerase chain reaction; ST2=growth STimulation expressed gene 2
QRT-PCR components for sST2 expression level.
| Components | Volume |
|---|---|
| RT2 SYBR® Green qPCR Mastermix | 5 µl |
| F Primer (10 pmol/µl) | 0.3 µl |
| R Primer (10 pmol/µl) | 0.3 µl |
| Ribonuclease/deoxyribonuclease-free water | 3.9 µl |
| cDNA (50 ng/µl) | 0,5 µl |
|
| 10 µl |
cDNA=complementary deoxyribonucleic acid; QRT-PCR=quantitative real-time polymerase chain reaction;
sST2=soluble growth STimulation expressed gene 2
QRT-PCR settings for ST2.
| Temperature (ºC) | Time | ||
|---|---|---|---|
| Enzyme activation | 95 | 10 minutes | |
| Denaturation | 95 | 15 seconds | }40 times |
| Primer binding/elongation | 60 | 60 seconds |
QRT-PCR=quantitative real-time polymerase chain reaction; ST2=growth STimulation expressed gene 2
ST2 and beta-actin forward and reverse primers.
| Forward primer | Reverse primer | |
|---|---|---|
| ST2 | 5'-TTCCAGTAATCGGAGCCCCT-3' | 5'-AACCATGTGCAAGGGGAAGAG-3' |
| Beta-actin | 5'-CGTACCACAGGCATTGTGATG-3' | 5'-TTTGATGTCACGCACGATTTC-3' |
ST2=growth STimulation expressed gene 2
Fig. 2Determination of soluble growth STimulation expressed gene 2 (sST2) level of as a biomarker for coronary artery disease (CAD) in pericardial fluid (PF) and plasma.
Fig. 3Fold change values of soluble growth STimulation expressed gene 2 in pericardial fluid (PF) and plasma of coronary artery disease.
Demographic characteristics of the control and patient groups included in the study.
| Variable | Control | Patients |
|---|---|---|
| Gender (female/male, %) | 12/28 (30%/70%) | 13/27 (32.5%/67.5%) |
| Age (years) | 63 | 61 |
Statistical results of gene expression of sST2 in PF and plasma.
| Average Ct | Average Delta (Ct) | 2^(-AVG.(Delta(Ct)) | Fold change | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| PF | CAD plasma | Control plasma | PF | CAD plasma | Control plasma | PF | CAD plasma | Control plasma | |||
| 13.33±0.59 | 19.69±2.88 | 2.26±0.34 | 0.790741 | 0.39037 | 0.7450 | 0.57805 | 131.073 | 0.1506 | 22675 |
| |
AVG Delta (Ct)=(Ct (GOI) - AVG Ct (HKG)).
AVG=average; CAD=coronary artery disease; PF=pericardial fluid; Ct=cycle threshold; sST2=soluble growth STimulation expressed gene 2
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| Authors' roles & responsibilities | |
|---|---|
| RD | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| MP | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| MI | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| IK | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| ET | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| MSA | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |
| ÖG | Substantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; final approval of the version to be published |