| Literature DB >> 33349961 |
Claudia Ottka1,2,3,4, Katariina Vapalahti1,2,3,4, Ann-Marie Määttä5, Nanna Huuskonen5, Sinikka Sarpanen6, Liisa Jalkanen7, Hannes Lohi1,2,3,4.
Abstract
BACKGROUND: The kidneys have many essential metabolic functions, and metabolic disturbances during decreased renal function have not been studied extensively.Entities:
Keywords: NMR; acute renal failure; chronic renal failure; metabolomics
Mesh:
Substances:
Year: 2020 PMID: 33349961 PMCID: PMC7848334 DOI: 10.1111/jvim.16011
Source DB: PubMed Journal: J Vet Intern Med ISSN: 0891-6640 Impact factor: 3.175
FIGURE 1Study workflow. Rounded boxes include information on materials, boxes information on methods. Black points represent sample characteristics and circles represent data handling procedures. Arrows represent statistical analyses, and analyses primarily evaluated in this article are in bold
Summary of the most common breeds in the case and control groups
| Cases | Controls | ||
|---|---|---|---|
| Breed | % | Breed | % |
| Unknown | 43.5 | Unknown | 21.3 |
| Lagotto Romagnolo | 8.7 | Mixed breed | 8.0 |
| Poodle | 4.3 | Labrador Retriever | 3.8 |
| Nova Scotia Duck Tolling Retriever | 4.3 | German Shepherd Dog | 2.7 |
| Bichon Frise | 4.3 | Golden Retriever | 2.4 |
| Bernese Mountain Dog | 4.3 | Shetland Sheepdog | 2.2 |
| Schapendoes | 4.3 | Finnish Lapphund | 2.2 |
| Collie Rough | 4.3 | Poodle | 1.9 |
| Miniature Pinscher | 4.3 | Spanish Water Dog | 1.8 |
| Cavalier King Charles Spaniel | 4.3 | Jack Russell Terrier | 1.6 |
| American Staffordshire Terrier | 4.3 | Nova Scotia Duck Tolling Retriever | 1.5 |
| Dogue de Bordeaux | 4.3 | Swedish Elkhound | 1.3 |
| Bouvier des Flandres | 4.3 | Finnish Hound | 1.3 |
| Miniature Schnauzer | 1.1 | ||
| Bichon Frise | 1.1 | ||
Note: The table shows the 15 most common breeds in the case and control groups, including samples with unknown breed and mixed breeds. The total number of case group samples was 23, and control group samples was 873. The total number of breeds in the control group was 155, including mixed breed dogs, and 45.8% of the control group samples were taken from breeds not included in the 15 most common breeds.
Analytes with significant differences between the case and control group according to Wilcoxon rank‐sum test and logistic regression analysis
| Group | Analyte | Wilcoxon rank‐sum test | Logistic regression | ||
|---|---|---|---|---|---|
|
| AIC | AUC | |||
| Citrate | Citrate | <.001 | <.001 | 97 | 0.922 |
|
Amino acids | Phenylalanine/tyrosine | <.001 | <.001 | 178 | 0.861 |
| Tyrosine | <.001 | <.001 | 194 | 0.769 | |
| BCAA | <.001 | .007 | 205 | 0.724 | |
| Valine | <.001 | .007 | 205 | 0.731 | |
| Leucine | .005 | .003 | 203 | 0.717 | |
| Albumin | Albumin | .01 | .003 | 207 | 0.703 |
| Fatty acids | Linoleic acid % | <.001 | <.001 | 195 | 0.729 |
| Docosapentaenoic acid % | .176 | .005 | 207 | 0.642 | |
| Acetate | .004 | .583 | 216 | 0.720 | |
Note: All P‐values are FDR‐corrected. The full, log2‐transformed data with 23 cases and 873 controls were used in both the Wilcoxon rank‐sum test and logistic regression analysis. The control group represents a routine laboratory sample population.
Abbreviations: AIC, Akaike information criterion; AUC, area under the curve; BCAA, branched‐chain amino acids.
Significant difference, P < .05.
FIGURE 2Variable importance in random forest classification using the balanced data. Ten biomarkers with the highest variable importance are included in the figure. The higher the variable importance, the more important the feature is in predicting high creatinine concentration. Random forest classification was conducted using the balanced, log2‐transformed and normalized data with 23 cases and 127 controls. The control group represents a routine laboratory sample population.BCAA, branched‐chain amino acids
FIGURE 3Heatmap of the balanced data. Metabolites associated with elevated creatinine concentrations according to the Wilcoxon rank‐sum test, logistic regression analysis or random forest classification are included. The heatmap was created using the balanced log2‐transformed and normalized data with 23 cases and 127 controls. The control group represents a routine laboratory sample population. Each column represents one sample. Columns with a red line on top represent the case group, and the columns with a green line on top represent the control group. In the subsequent rows, red hues represent increased concentrations and blue hues decreased concentrations. Color intensity increases proportionally to the magnitude of the change
Median concentrations of analytes associated with elevated creatinine concentrations according to the Wilcoxon rank‐sum test, logistic regression analysis or random forest classification
| Analyte | Median case (IQR) | Median control (IQR) | RI (CI) |
|---|---|---|---|
| Citrate (mmol/L) | 0.149 (0.117–0.180) | 0.075 (0.067‐0.086) | 0.061 (0.059‐0.063) to 0.123 (0.120‐0.125) |
| Phenylalanine/tyrosine ratio | 0.998 (0.925‐1.288) | 0.767 (0.664‐0.894) | 0.513 (0.494‐0.530) to 1.049 (1.026‐1.098) |
| Tyrosine (mmol/L) | 0.050 (0.044‐0.058) | 0.065 (0.056‐0.074) | 0.041 (0.039‐0.043) to 0.089 (0.086‐0.091) |
| BCAA (mmol/L) | 0.309 (0.266‐0.386) | 0.384 (0.333‐0.446) | 0.242 (0.215‐0.251) to 0.515 (0.502‐0.531) |
| Valine (mmol/L) | 0.149 (0.131‐0.183) | 0.189 (0.163‐0.224) | 0.113 (0.099‐0.119) to 0.251 (0.243‐0.261) |
| Leucine (mmol/L) | 0.106 (0.086‐0.132) | 0.128 (0.112‐0.149) | 0.083 (0.078‐0.088) to 0.185 (0.181‐0.189) |
| Alanine (mmol/L) | 0.338 (0.283‐0.446) | 0.398 (0.342‐0.462) | 0.216 (0.199‐0.222) to 0.597 (0.580‐0.624) |
| Albumin (g/L) | 27.0 (25.3‐28.9) | 28.9 (27.5‐30.2) | 25.2 (24.2‐25.7) to 32.4 (32.1‐32.8) |
| Linoleic acid (%) | 26.3 (25.5‐26.7) | 27.3 (26.3‐27.9) | 24.1 (23.9‐24.4) to 28.6 (28.4‐28.7) |
| Docosapentaenoic acid (%) | 1.2 (.9‐1.4) | 1.3 (1.1‐1.5) | 1.1 (1.0‐1.1) to 2.0 (1.9‐2.0) |
| Acetate (mmol/L) | 0.028 (0.025‐0.037) | 0.024 (0.020‐0.029) | 0.021 (0.020‐0.021) to 0.037 (0.036‐0.037) |
Note: The full, untransformed data with 23 cases and 873 controls was used when calculating case and control group medians and their interquartile ranges (IQR). The control group represents a routine laboratory sample population. Reference intervals (RI) represent the reference intervals of the NMR method, and CI represent the confidence intervals of the reference limits.
Analyte's case group median higher than the analysis reference interval and its 90% CI.
FIGURE 4A‐I, Box plots of analytes associated with elevated creatinine concentration according to the Wilcoxon rank‐sum test, logistic regression analysis or random forest classification. The figure only includes branched‐chain amino acids as total branched‐chain amino acids (BCAA), the individual branched‐chain amino acids leucine and valine are not depicted in this figure, although they reached significance in statistical analyses. The full, untransformed data with 23 cases and 873 controls was used to create the box plots. The control group represents a routine laboratory sample population. Red lines and bars: case group. Blue lines and bars: control group. Black lines: reference intervals of the NMR method