| Literature DB >> 33343101 |
Wendy Olsen1, Manasi Bera2, Amaresh Dubey3, Jihye Kim1, Arkadiusz Wiśniowski1, Purva Yadav3.
Abstract
We improve upon the modelling of India's pandemic vulnerability. Our model is multidisciplinary and recognises the nested levels of the epidemic. We create a model of the risk of severe COVID-19 and death, instead of a model of transmission. Our model allows for socio-demographic-group differentials in risk, obesity and underweight people, morbidity status and other conditioning regional and lifestyle factors. We build a hierarchical multilevel model of severe COVID-19 cases, using three different data sources: the National Family Health Survey for 2015/16, Census data for 2011 and data for COVID-19 deaths obtained cumulatively until June 2020. We provide results for 11 states of India, enabling best-yet targeting of policy actions. COVID-19 deaths in north and central India were higher in areas with older and overweight populations, and were more common among people with pre-existing health conditions, or who smoke, or who live in urban areas. Policy experts may both want to 'follow World Health Organisation advice' and yet also use disaggregated and spatially specific data to improve wellbeing outcomes during the pandemic. The future uses of our innovative data-combining model are numerous.Entities:
Keywords: Bayesian model; Data combining; Epidemic modelling; Hierarchical model; India; Latent variable; Pandemic; SARS-CoV2 virus pandemic; Severe COVID-19
Year: 2020 PMID: 33343101 PMCID: PMC7737421 DOI: 10.1057/s41287-020-00333-5
Source DB: PubMed Journal: Eur J Dev Res ISSN: 0957-8811
Fig. 1Cumulative Indian COVID-19 cases per 100,000 population, by districts (August 2020)
Fig. 2A hierarchical model of COVID-19 contagion and severity. Notes Level 1 is persons, and Level 2 is districts. The hierarchical (multilevel) model can be estimated cross-sectionally or over time. Our models 1–2 use a subset of the above variables cross-sectionally. Arrows represent influence over time; the orange variable is latent and we estimate the risk of death, see Eqs. 1–3
Summary of the variables in the regression model
| Variable | Mean | SD | Min | Max | Description | |
|---|---|---|---|---|---|---|
| Deaths | 24.22 | 189.14 | 0 | 3,166 | 345 | Counts of deaths due to COVID-19 in the district (median = 1) |
| Female | 0.50 | 0.50 | 0 | 1 | 69,837 | Male = 0, female = 1 |
| Urban | 0.29 | 0.46 | 0 | 1 | 69,837 | Person’s residence is rural = 0, urban = 1 |
| SC (Dalits) | 0.19 | 0.40 | 0 | 1 | 69,837 | Other groups = 0, scheduled caste (SC or Dalit) = 1 |
| ST (Adivasi people) | 0.14 | 0.34 | 0 | 1 | 69,837 | Other groups = 0, scheduled tribes (ST or Adivasi) = 1 |
| Smoking | 0.35 | 0.48 | 0 | 1 | 69,837 | Non-smoker = 0, smoker = 1 |
| Ill-health | 0.42 | 1.22 | 0 | 4 | 69,837 | Confirmatory factor index of blood pressure, diabetes, asthma, heart disease, cancer (0–4) |
| Low assets | 0.23 | 0.42 | 0 | 1 | 69,837 | The lowest quintile of wealth is coded as 1, and the four higher asset quintiles = 0 |
| Obesity | 0.04 | 0.19 | 0 | 1 | 69,837 | BMI ≥ 30 at individual level = 1, others = 0 |
| Underweight | 0.14 | 0.35 | 0 | 1 | 69,837 | BMI < 18 at individual level = 1, others = 0 |
| Age 65+ | 0.05 | 0.01 | 0.02 | 0.12 | 345 | The proportion of population of ages 65 + living in the district |
| Migration | 0.09 | 0.04 | 0.02 | 0.32 | 345 | The proportion of in-migrants (0–9 years) living in the district |
| Obesity% | 0.04 | 0.03 | 0 | 0.14 | 345 | The proportion of people living in the district with BMI ≥ 30 |
| Underweight% | 0.20 | 0.06 | 0.05 | 0.37 | 345 | The proportion of people living in the district with BMI < 18 |
Sources (1) NFHS 2015/16 couples’ individual data; (2) deaths—howindialives.com (accessed on the 17th of June); (3) age 65+ and migration—Indian Census 2011, summaries at District level
Notes The reference category is coded as “0” in all cases
Fig. 5Map of India’s Observed and Predicted Number of Deaths. Notes: For greater coherence we modelled 11 states rather than all states, dark grey being parts not included; figures greater than 5 are rounded down to 5 here.
Source https://www.howindialives.com/gram/coronadistricts/ (update date: June 17, 2020). Map source: projects.datameet.org/maps/districts, accessed Sept. 2020
Regression result of the models for counts of COVID-19 deaths
| Variables | Model 1 parameter estimates | Model 2 parameter estimates | ||||||
|---|---|---|---|---|---|---|---|---|
| mean | SD | 2.5% | 97.5% | mean | SD | 2.5% | 97.5% | |
| Constant | − 12.87 | 0.27 | − 13.45 | − 12.36 | − 12.46 | 0.29 | − 13.01 | − 11.91 |
| Female | − 3.89 | 0.45 | − 4.79 | − 3.1 | − 4.05 | 0.45 | − 4.94 | − 3.24 |
| Urban | ||||||||
| SC (Dalit) | ||||||||
| ST (Adivasi) | ||||||||
| Smoking | ||||||||
| Ill-health | − 0.26 | 0.03 | − 0.33 | − 0.2 | − 0.29 | 0.04 | − 0.36 | − 0.22 |
| LowAssets | − 3.08 | 0.4 | − 4 | − 2.42 | ||||
| Age 65+* | ||||||||
| Migration* | ||||||||
| Obesity% | ||||||||
| Underweight% | ||||||||
Sources Dependent variable (COVID-19 death) is from How India Lives (2020). Individual variables and obesity % and underweight % by district averaging are from NFHS 2015/16; and *age and migration data were obtained from Census data, 2011
Notes All the coefficients are significant. Rows in bold indicate increased risk of death. The dependent variable’s, D, units are the counts of COVID-19 deaths. The population variable P acts as offset, leading to the predictions made in terms of rates μ. Mean, SD, 2.5% and 97.5% refer to the mean, standard deviation and percentiles of the posterior distributions for the model parameters. The last four row variables are measured at district level, and the rest at individual level, reflecting the hierarchical model. Variables: At Level 1, Ill-health is an index of comorbidities. See Table 1 for details of SC, ST, smoker status and urban residence. At Level 2 (districts), migration indicates the proportion of in-migrants (0–9 years) living in the district. Age 65+ is the % (scaled 0 to 1) of population in each district who are over age 65. Obesity% is the percentage (scaled 0–1) of district population who are obese (BMI ≥ 30); and underweight% is the percentage (scaled 0–1) of district population who are underweight (BMI < 18). The reference category is coded “0” (as in Table 1). Model 1 vs 2: In Model 2 only, LowAssets indicates the lowest asset index quintile, coded as 1, with other quintiles set to 0 (see Table 1). This is an indicator of household poverty
Fig. 3Predicted Indian deaths by district rate of urban residents, obesity and underweight. Notes Predictions use model 2. Prediction a uses the percent of district population who are urban residents (here scaled as ratio 0–1); b uses the percent of district population who are obese with BMI ≥ 30; c uses the percent of district population who are underweight with BMI < 18. Points are the predicted posterior means of each of 344 districts. Mumbai (predicted deaths 66) is excluded from these plots. Note that the smoothed curve here in each panel shows a linear trend line fit to the data in the plot, not the model results. @The urban % across a district is used in a, but individual urban residence was used in the actual regression models 1 and 2
Fig. 4Posterior characteristics of Model 2 parameters. Notes The posterior means, posterior distributions and 95% Credible Intervals of each coefficient are graphed. See also Fig. A.1 in the Online Annex