Literature DB >> 34053267

Challenges in control of COVID-19: short doubling time and long delay to effect of interventions.

Lorenzo Pellis1,2,3, Francesca Scarabel1,2,4,5, Helena B Stage1,2, Christopher E Overton1,6,2, Lauren H K Chappell7, Elizabeth Fearon8,9, Emma Bennett10, Katrina A Lythgoe11,12, Thomas A House1,2,3,13, Ian Hall1,2,3,10.   

Abstract

Early assessments of the growth rate of COVID-19 were subject to significant uncertainty, as expected with limited data and difficulties in case ascertainment, but as cases were recorded in multiple countries, more robust inferences could be made. Using multiple countries, data streams and methods, we estimated that, when unconstrained, European COVID-19 confirmed cases doubled on average every 3 days (range 2.2-4.3 days) and Italian hospital and intensive care unit admissions every 2-3 days; values that are significantly lower than the 5-7 days dominating the early published literature. Furthermore, we showed that the impact of physical distancing interventions was typically not seen until at least 9 days after implementation, during which time confirmed cases could grow eightfold. We argue that such temporal patterns are more critical than precise estimates of the time-insensitive basic reproduction number R0 for initiating interventions, and that the combination of fast growth and long detection delays explains the struggle in countries' outbreak response better than large values of R0 alone. One year on from first reporting these results, reproduction numbers continue to dominate the media and public discourse, but robust estimates of unconstrained growth remain essential for planning worst-case scenarios, and detection delays are still key in informing the relaxation and re-implementation of interventions. This article is part of the theme issue 'Modelling that shaped the early COVID-19 pandemic response in the UK'.

Entities:  

Keywords:  early growth rate; incubation period; non-pharmaceutical interventions; onset-to-hospitalization delay; reproduction number; unconstrained epidemic

Mesh:

Year:  2021        PMID: 34053267      PMCID: PMC8165602          DOI: 10.1098/rstb.2020.0264

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  37 in total

1.  China coronavirus: what do we know so far?

Authors:  Elisabeth Mahase
Journal:  BMJ       Date:  2020-01-24

Review 2.  The reproductive number of COVID-19 is higher compared to SARS coronavirus.

Authors:  Ying Liu; Albert A Gayle; Annelies Wilder-Smith; Joacim Rocklöv
Journal:  J Travel Med       Date:  2020-03-13       Impact factor: 8.490

3.  Challenges in control of COVID-19: short doubling time and long delay to effect of interventions.

Authors:  Lorenzo Pellis; Francesca Scarabel; Helena B Stage; Christopher E Overton; Lauren H K Chappell; Elizabeth Fearon; Emma Bennett; Katrina A Lythgoe; Thomas A House; Ian Hall
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-05-31       Impact factor: 6.237

4.  High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2.

Authors:  Steven Sanche; Yen Ting Lin; Chonggang Xu; Ethan Romero-Severson; Nick Hengartner; Ruian Ke
Journal:  Emerg Infect Dis       Date:  2020-06-21       Impact factor: 6.883

5.  Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study.

Authors:  Joseph T Wu; Kathy Leung; Gabriel M Leung
Journal:  Lancet       Date:  2020-01-31       Impact factor: 79.321

6.  COVID-19 pandemic-related lockdown: response time is more important than its strictness.

Authors:  Gil Loewenthal; Shiran Abadi; Oren Avram; Keren Halabi; Noa Ecker; Natan Nagar; Itay Mayrose; Tal Pupko
Journal:  EMBO Mol Med       Date:  2020-10-19       Impact factor: 12.137

7.  Ten Epidemiological Parameters of COVID-19: Use of Rapid Literature Review to Inform Predictive Models During the Pandemic.

Authors:  Luciana Guerra Gallo; Ana Flávia de Morais Oliveira; Amanda Amaral Abrahão; Leticia Assad Maia Sandoval; Yure Rodrigues Araújo Martins; Maria Almirón; Fabiana Sherine Ganem Dos Santos; Wildo Navegantes Araújo; Maria Regina Fernandes de Oliveira; Henry Maia Peixoto
Journal:  Front Public Health       Date:  2020-12-01

8.  Using statistics and mathematical modelling to understand infectious disease outbreaks: COVID-19 as an example.

Authors:  Christopher E Overton; Helena B Stage; Shazaad Ahmad; Jacob Curran-Sebastian; Paul Dark; Rajenki Das; Elizabeth Fearon; Timothy Felton; Martyn Fyles; Nick Gent; Ian Hall; Thomas House; Hugo Lewkowicz; Xiaoxi Pang; Lorenzo Pellis; Robert Sawko; Andrew Ustianowski; Bindu Vekaria; Luke Webb
Journal:  Infect Dis Model       Date:  2020-07-04

9.  Rapid implementation of mobile technology for real-time epidemiology of COVID-19.

Authors:  David A Drew; Long H Nguyen; Tim D Spector; Andrew T Chan; Claire J Steves; Cristina Menni; Maxim Freydin; Thomas Varsavsky; Carole H Sudre; M Jorge Cardoso; Sebastien Ourselin; Jonathan Wolf
Journal:  Science       Date:  2020-05-05       Impact factor: 47.728

10.  Effect of changing case definitions for COVID-19 on the epidemic curve and transmission parameters in mainland China: a modelling study.

Authors:  Tim K Tsang; Peng Wu; Yun Lin; Eric H Y Lau; Gabriel M Leung; Benjamin J Cowling
Journal:  Lancet Public Health       Date:  2020-04-21
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  35 in total

1.  Effectiveness of the BNT162b2 (Pfizer-BioNTech) and the ChAdOx1 nCoV-19 (Oxford-AstraZeneca) vaccines for reducing susceptibility to infection with the Delta variant (B.1.617.2) of SARS-CoV-2.

Authors:  Karan Pattni; Daniel Hungerford; Sarah Adams; Iain Buchan; Christopher P Cheyne; Marta García-Fiñana; Ian Hall; David M Hughes; Christopher E Overton; Xingna Zhang; Kieran J Sharkey
Journal:  BMC Infect Dis       Date:  2022-03-20       Impact factor: 3.090

2.  EpiBeds: Data informed modelling of the COVID-19 hospital burden in England.

Authors:  Christopher E Overton; Lorenzo Pellis; Helena B Stage; Francesca Scarabel; Joshua Burton; Christophe Fraser; Ian Hall; Thomas A House; Chris Jewell; Anel Nurtay; Filippo Pagani; Katrina A Lythgoe
Journal:  PLoS Comput Biol       Date:  2022-09-06       Impact factor: 4.779

3.  Thromboprophylaxis and clinical outcomes in moderate COVID-19 patients: A comparative study.

Authors:  Asmaa S Mohamed; Hosam M Ahmad; Alyaa S A Abdul-Raheem; Fatma M M Kamel; Ali Khames; Ahmed F Mady
Journal:  Res Social Adm Pharm       Date:  2022-07-16

4.  Challenges in estimation, uncertainty quantification and elicitation for pandemic modelling.

Authors:  Ben Swallow; Paul Birrell; Joshua Blake; Mark Burgman; Peter Challenor; Luc E Coffeng; Philip Dawid; Daniela De Angelis; Michael Goldstein; Victoria Hemming; Glenn Marion; Trevelyan J McKinley; Christopher E Overton; Jasmina Panovska-Griffiths; Lorenzo Pellis; Will Probert; Katriona Shea; Daniel Villela; Ian Vernon
Journal:  Epidemics       Date:  2022-02-10       Impact factor: 4.396

5.  Modelling that shaped the early COVID-19 pandemic response in the UK.

Authors:  Ellen Brooks-Pollock; Leon Danon; Thibaut Jombart; Lorenzo Pellis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-05-31       Impact factor: 6.671

6.  Challenges in control of COVID-19: short doubling time and long delay to effect of interventions.

Authors:  Lorenzo Pellis; Francesca Scarabel; Helena B Stage; Christopher E Overton; Lauren H K Chappell; Elizabeth Fearon; Emma Bennett; Katrina A Lythgoe; Thomas A House; Ian Hall
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-05-31       Impact factor: 6.237

7.  Convolutional Sparse Support Estimator-Based COVID-19 Recognition From X-Ray Images.

Authors:  Mehmet Yamac; Mete Ahishali; Aysen Degerli; Serkan Kiranyaz; Muhammad E H Chowdhury; Moncef Gabbouj
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2021-05-03       Impact factor: 14.255

8.  Shut and re-open: the role of schools in the spread of COVID-19 in Europe.

Authors:  Helena B Stage; Joseph Shingleton; Sanmitra Ghosh; Francesca Scarabel; Lorenzo Pellis; Thomas Finnie
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-05-31       Impact factor: 6.237

9.  Hospital length of stay for COVID-19 patients: Data-driven methods for forward planning.

Authors:  Bindu Vekaria; Christopher Overton; Arkadiusz Wiśniowski; Shazaad Ahmad; Andrea Aparicio-Castro; Jacob Curran-Sebastian; Jane Eddleston; Neil A Hanley; Thomas House; Jihye Kim; Wendy Olsen; Maria Pampaka; Lorenzo Pellis; Diego Perez Ruiz; John Schofield; Nick Shryane; Mark J Elliot
Journal:  BMC Infect Dis       Date:  2021-07-22       Impact factor: 3.667

10.  Social distancing merely stabilized COVID-19 in the United States.

Authors:  Aaron B Wagner; Elaine L Hill; Sean E Ryan; Ziteng Sun; Grace Deng; Sourbh Bhadane; Victor Hernandez Martinez; Peter Wu; Dongmei Li; Ajay Anand; Jayadev Acharya; David S Matteson
Journal:  Stat (Int Stat Inst)       Date:  2020-10-05
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