Literature DB >> 33335105

Organism body size structures the soil microbial and nematode community assembly at a continental and global scale.

Lu Luan1,2, Yuji Jiang3, Menghua Cheng4, Francisco Dini-Andreote5, Yueyu Sui6, Qinsong Xu4, Stefan Geisen7, Bo Sun8.   

Abstract

Body size is a key life-history trait that influences community assembly by affecting how ecological processes operate at the organism level. However, the extent to which the relative influences of ecological processes mediate the assembly of differentially sized soil organisms is still unknown. Here, we investigate the community assembly of differentially sized soil microorganisms and microfauna using a continental-scale sampling effort combined with a global-scale meta-analysis. Our results reveal a general relationship between organism body size and the stochastic-deterministic balance operating on community assembly. The smallest microorganisms (bacteria) are relatively more influenced by dispersal-based stochastic processes, while larger ones (fungi, protists and nematodes) are more structured by selection-based deterministic processes. This study elucidates a significant and consistent relationship between an organism life-history trait and how distinct ecological processes operate in mediating their respective community assemblages, thus providing a better understanding of the mechanisms supporting soil biodiversity.

Entities:  

Year:  2020        PMID: 33335105     DOI: 10.1038/s41467-020-20271-4

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  43 in total

Review 1.  Microbial biogeography: putting microorganisms on the map.

Authors:  Jennifer B Hughes Martiny; Brendan J M Bohannan; James H Brown; Robert K Colwell; Jed A Fuhrman; Jessica L Green; M Claire Horner-Devine; Matthew Kane; Jennifer Adams Krumins; Cheryl R Kuske; Peter J Morin; Shahid Naeem; Lise Ovreås; Anna-Louise Reysenbach; Val H Smith; James T Staley
Journal:  Nat Rev Microbiol       Date:  2006-02       Impact factor: 60.633

Review 2.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

3.  Fungal biogeography. Global diversity and geography of soil fungi.

Authors:  Leho Tedersoo; Mohammad Bahram; Sergei Põlme; Urmas Kõljalg; Nourou S Yorou; Ravi Wijesundera; Luis Villarreal Ruiz; Aída M Vasco-Palacios; Pham Quang Thu; Ave Suija; Matthew E Smith; Cathy Sharp; Erki Saluveer; Alessandro Saitta; Miguel Rosas; Taavi Riit; David Ratkowsky; Karin Pritsch; Kadri Põldmaa; Meike Piepenbring; Cherdchai Phosri; Marko Peterson; Kaarin Parts; Kadri Pärtel; Eveli Otsing; Eduardo Nouhra; André L Njouonkou; R Henrik Nilsson; Luis N Morgado; Jordan Mayor; Tom W May; Luiza Majuakim; D Jean Lodge; Su See Lee; Karl-Henrik Larsson; Petr Kohout; Kentaro Hosaka; Indrek Hiiesalu; Terry W Henkel; Helery Harend; Liang-dong Guo; Alina Greslebin; Gwen Grelet; Jozsef Geml; Genevieve Gates; William Dunstan; Chris Dunk; Rein Drenkhan; John Dearnaley; André De Kesel; Tan Dang; Xin Chen; Franz Buegger; Francis Q Brearley; Gregory Bonito; Sten Anslan; Sandra Abell; Kessy Abarenkov
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

Review 4.  Belowground biodiversity and ecosystem functioning.

Authors:  Richard D Bardgett; Wim H van der Putten
Journal:  Nature       Date:  2014-11-27       Impact factor: 49.962

5.  Soil nematode abundance and functional group composition at a global scale.

Authors:  Johan van den Hoogen; Stefan Geisen; Devin Routh; Howard Ferris; Walter Traunspurger; David A Wardle; Ron G M de Goede; Byron J Adams; Wasim Ahmad; Walter S Andriuzzi; Richard D Bardgett; Michael Bonkowski; Raquel Campos-Herrera; Juvenil E Cares; Tancredi Caruso; Larissa de Brito Caixeta; Xiaoyun Chen; Sofia R Costa; Rachel Creamer; José Mauro da Cunha Castro; Marie Dam; Djibril Djigal; Miguel Escuer; Bryan S Griffiths; Carmen Gutiérrez; Karin Hohberg; Daria Kalinkina; Paul Kardol; Alan Kergunteuil; Gerard Korthals; Valentyna Krashevska; Alexey A Kudrin; Qi Li; Wenju Liang; Matthew Magilton; Mariette Marais; José Antonio Rodríguez Martín; Elizaveta Matveeva; El Hassan Mayad; Christian Mulder; Peter Mullin; Roy Neilson; T A Duong Nguyen; Uffe N Nielsen; Hiroaki Okada; Juan Emilio Palomares Rius; Kaiwen Pan; Vlada Peneva; Loïc Pellissier; Julio Carlos Pereira da Silva; Camille Pitteloud; Thomas O Powers; Kirsten Powers; Casper W Quist; Sergio Rasmann; Sara Sánchez Moreno; Stefan Scheu; Heikki Setälä; Anna Sushchuk; Alexei V Tiunov; Jean Trap; Wim van der Putten; Mette Vestergård; Cecile Villenave; Lieven Waeyenberge; Diana H Wall; Rutger Wilschut; Daniel G Wright; Jiue-In Yang; Thomas Ward Crowther
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

6.  Structure and function of the global topsoil microbiome.

Authors:  Mohammad Bahram; Falk Hildebrand; Sofia K Forslund; Jennifer L Anderson; Nadejda A Soudzilovskaia; Peter M Bodegom; Johan Bengtsson-Palme; Sten Anslan; Luis Pedro Coelho; Helery Harend; Jaime Huerta-Cepas; Marnix H Medema; Mia R Maltz; Sunil Mundra; Pål Axel Olsson; Mari Pent; Sergei Põlme; Shinichi Sunagawa; Martin Ryberg; Leho Tedersoo; Peer Bork
Journal:  Nature       Date:  2018-08-01       Impact factor: 49.962

7.  Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Authors:  James C Stegen; James K Fredrickson; Michael J Wilkins; Allan E Konopka; William C Nelson; Evan V Arntzen; William B Chrisler; Rosalie K Chu; Robert E Danczak; Sarah J Fansler; David W Kennedy; Charles T Resch; Malak Tfaily
Journal:  Nat Commun       Date:  2016-04-07       Impact factor: 14.919

8.  A communal catalogue reveals Earth's multiscale microbial diversity.

Authors:  Luke R Thompson; Jon G Sanders; Daniel McDonald; Amnon Amir; Joshua Ladau; Kenneth J Locey; Robert J Prill; Anupriya Tripathi; Sean M Gibbons; Gail Ackermann; Jose A Navas-Molina; Stefan Janssen; Evguenia Kopylova; Yoshiki Vázquez-Baeza; Antonio González; James T Morton; Siavash Mirarab; Zhenjiang Zech Xu; Lingjing Jiang; Mohamed F Haroon; Jad Kanbar; Qiyun Zhu; Se Jin Song; Tomasz Kosciolek; Nicholas A Bokulich; Joshua Lefler; Colin J Brislawn; Gregory Humphrey; Sarah M Owens; Jarrad Hampton-Marcell; Donna Berg-Lyons; Valerie McKenzie; Noah Fierer; Jed A Fuhrman; Aaron Clauset; Rick L Stevens; Ashley Shade; Katherine S Pollard; Kelly D Goodwin; Janet K Jansson; Jack A Gilbert; Rob Knight
Journal:  Nature       Date:  2017-11-01       Impact factor: 49.962

9.  Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles.

Authors:  Lu Luan; Chao Liang; Lijun Chen; Haotian Wang; Qinsong Xu; Yuji Jiang; Bo Sun
Journal:  mSystems       Date:  2020-06-09       Impact factor: 6.496

10.  The global-scale distributions of soil protists and their contributions to belowground systems.

Authors:  Angela M Oliverio; Stefan Geisen; Manuel Delgado-Baquerizo; Fernando T Maestre; Benjamin L Turner; Noah Fierer
Journal:  Sci Adv       Date:  2020-01-24       Impact factor: 14.136

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  6 in total

1.  Distinct and Temporally Stable Assembly Mechanisms Shape Bacterial and Fungal Communities in Vineyard Soils.

Authors:  Stefano Larsen; Davide Albanese; James Stegen; Pietro Franceschi; E Coller; Roberto Zanzotti; Claudio Ioriatti; Erika Stefani; Massimo Pindo; Alessandro Cestaro; Claudio Donati
Journal:  Microb Ecol       Date:  2022-07-14       Impact factor: 4.192

Review 2.  Addressing the dark matter of gene therapy: technical and ethical barriers to clinical application.

Authors:  Kateryna Kratzer; Landon J Getz; Thibaut Peterlini; Jean-Yves Masson; Graham Dellaire
Journal:  Hum Genet       Date:  2021-04-08       Impact factor: 4.132

3.  Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment.

Authors:  Huiyun Gan; Xingchun Li; Yonglong Wang; Pengpeng Lü; Niuniu Ji; Hui Yao; Shan Li; Liangdong Guo
Journal:  Microbiol Spectr       Date:  2022-04-27

4.  A Drying-Rewetting Cycle Imposes More Important Shifts on Soil Microbial Communities than Does Reduced Precipitation.

Authors:  Xiao-Bo Wang; Hamed Azarbad; Laura Leclerc; Jessica Dozois; Eugenie Mukula; Étienne Yergeau
Journal:  mSystems       Date:  2022-06-28       Impact factor: 7.324

5.  Soil microbial communities shift along an urban gradient in Berlin, Germany.

Authors:  James Whitehead; Julien Roy; Stefan Hempel; Matthias C Rillig
Journal:  Front Microbiol       Date:  2022-08-12       Impact factor: 6.064

6.  Plant traits and community composition drive the assembly processes of abundant and rare fungi across deserts.

Authors:  Jianming Wang; Mengjun Qu; Yin Wang; Nianpeng He; Jingwen Li
Journal:  Front Microbiol       Date:  2022-09-28       Impact factor: 6.064

  6 in total

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