| Literature DB >> 33330372 |
James A Ezugwu1,2, Uchechukwu C Okoro1, Mercy A Ezeokonkwo1, China R Bhimapaka2, Sunday N Okafor3, David I Ugwu1, Ogechi C Ekoh4, Solomon I Attah1.
Abstract
The increase of antimicrobial resistance (AMR) and antimalarial resistance are complex and severe health issues today, as many microbial strains have become resistant to market drugs. The choice for the synthesis of new dipeptide-carboxamide derivatives is as a result of their wide biological properties such as antimicrobial, anti-inflammatory, and antioxidant activities. The condensation reaction of substituted benzenesulphonamoyl pentanamides with the carboxamide derivatives using peptide coupling reagents gave targeted products (8a-j). The in silico antimalarial and antibacterial studies showed good interactions of the compounds with target protein residues and a higher dock score in comparison with standard drugs. In the in vivo study, compound 8j was the most potent antimalarial agent with 61.90% inhibition comparable with 67% inhibition for Artemisinin. In the in vitro antimicrobial activity, compounds 8a and 8b (MIC 1.2 × 10-3 M and 1.1 × 10-3 M) were most potent against S. aureus; compound 8a, 8b, and 8j with MIC 6.0 × 10-3 M, 5.7 × 10-4 M, and 6.5 × 10-4 M, respectively, were the most active against B. subtilis; compound 8b (MIC 9.5 × 10-4 M) was most active against E.coli while 8a, 8b and 8d were the most active against S. typhi. Compounds 8c and 8h (MIC 1.3 × 10-3 M) each were the most active against C. albicans, while compound 8b (MIC 1.3 × 10-4 M) was most active against A. niger.Entities:
Keywords: Leu-Val dipeptide; antimalarial; antimicrobial; benzenesulfonamide; in silico studies
Year: 2020 PMID: 33330372 PMCID: PMC7732421 DOI: 10.3389/fchem.2020.583926
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Physicochemical properties of the compounds.
| 8a | 4 | 3 | 2 | 11 | 0 | 1 | 4.45 | 13.40 | 150.19 | 504.61 |
| 8b | 4 | 3 | 2 | 11 | 0 | 1 | 4.75 | 13.47 | 150.19 | 525.03 |
| 8c | 4 | 3 | 2 | 12 | 0 | 1 | 5.30 | 14.32 | 150.19 | 532.66 |
| 8d | 4 | 3 | 2 | 11 | 0 | 1 | 4.34 | 13.04 | 150.19 | 508.57 |
| 8e | 4 | 3 | 2 | 10 | 0 | 0 | 4.82 | 13.32 | 104.37 | 473.64 |
| 8f | 4 | 3 | 2 | 11 | 0 | 1 | 5.66 | 14.23 | 104.37 | 501.69 |
| 8g | 4 | 3 | 2 | 10 | 0 | 0 | 4.71 | 12.96 | 104.37 | 477.60 |
| 8h | 4 | 3 | 2 | 10 | 0 | 1 | 5.32 | 13.64 | 104.37 | 538.51 |
| 8i | 4 | 3 | 2 | 10 | 0 | 0 | 5.11 | 13.39 | 104.37 | 494.06 |
| 8j | 4 | 3 | 2 | 10 | 0 | 0 | 4.52 | 12.87 | 104.37 | 459.61 |
TPSA, total polar surface area; NA, number of atoms; MW, molecular weight; HBA, hydrogen bond acceptor; HBD, hydrogen bond donor; NV, number of violations; nRB, number of rotatable bond. RC, ring compounds; nAc, number of acid; logP (o/w) means the logarithm of 1-octanol/water partition coefficient.
Figure 12D representation of binding interaction of compound 8d and the amino acid residues of 5MMN.
Figure 22D representation of binding interaction of compound 8e and the amino acid residues of 1SME.
Scheme 1Synthesis of compounds (3a–b).
Scheme 2Synthesis of carboxamide derivatives (7a-f).
Scheme 3Synthesis of compounds (8a-j). (i) Na2CO3, H2O, HCl, −5–0°C, r.t, 4 h. (ii) EDC.HCl, HOBt, TEA, DCM, r.t, 19–24 h. (iii) TFA/DCM (1:1%). (iv) EDC.HCI, HOBt, TEA, r.t, 19–24 h.
Binding free energy, ΔG (kcal/mol).
| 1 | 8a | −6.57 | −7.73 |
| 2 | 8b | −6.45 | −7.69 |
| 3 | 8c | −6.71 | −7.80 |
| 4 | 8d | −7.10 | −7.01 |
| 5 | 8e | −6.05 | −8.71 |
| 6 | 8f | −5.74 | −7.75 |
| 7 | 8g | −6.31 | −7.44 |
| 8 | 8h | −6.04 | −7.45 |
| 9 | 8i | −6.70 | −8.27 |
| 10 | 8j | −6.66 | −7.06 |
| 11 | Standard drugs | −5.38 | −6.11 |
Figure 3The stereo view of compound 8d in the binding cavity of 5MMN.
Figure 4The stereo view of compound 8e in the binding cavity of 1SME.
Comparison of binding interactions of the native ligands and hit molecule (8e) to the binding sites of 1SME and 5MMN.
| 1SME-native ligand (Pepstatin) | TYR 192 | H-Bonding | 5.89 |
| 1SME-8e | GLY 216 | H-Bonding | 2.46 |
| 5MMN-native ligand: 1-ethyl-3-[8-methyl-5-(2-methyl-pyridin-4-yl)-isoquinolin-3-yl]-urea | THR 165 | H-bonding | 4.80 |
| 8d-5MMN | ILE 94 | Pi-alkyl | 4.58 |
Minimum inhibitory concentration (MIC) in molar concentration.
| 8a | 1.2 × 10−3 | 6.0 × 10−4 | 1.4 × 10−3 | 1.2 × 10−3 | 1.8 × 10−3 | 1.6 × 10−3 |
| 8b | 1.1 × 10−3 | 5.7 × 10−4 | 9.5 × 10−4 | 1.1 × 10−3 | 1.7 × 10−3 | 1.3 × 10−3 |
| 8c | 1.7 × 10−3 | 1.3 × 10−3 | 1.7 × 10−3 | 1.9 × 10−3 | 1.3 × 10−3 | 1.7 × 10−3 |
| 8d | 1.4 × 10−3 | 9.8 × 10−4 | 1.6 × 10−3 | 1.2 × 10−3 | 1.6 × 10−3 | 1.6 × 10−3 |
| 8e | 1.5 × 10−3 | 1.3 × 10−3 | 2.1 × 10−3 | 1.9 × 10−3 | + | + |
| 8f | + | 1.6 × 10−3 | 2.0 × 10−3 | + | + | + |
| 8g | 2.1 × 10−3 | 8.4 × 10−4 | 1.5 × 10−3 | 1.9 × 10−3 | 2.1 × 10−3 | + |
| 8h | + | 1.3 × 10−3 | 1.8 × 10−3 | + | 1.3 × 10−3 | 1.8 × 10−3 |
| 8i | 1.6 × 10−3 | 1.2 × 10−3 | 1.6 × 10−3 | 2.0 × 10−3 | 1.6 × 10−3 | 1.6 × 10−3 |
| 8j | 1.7 × 10−3 | 6.5 × 10−4 | 2.0 × 10−3 | 1.7 × 10−3 | + | + |
| Cipro. | 9.1 × 10−4 | 9.1 × 10−4 | 9.1 × 10−4 | 9.1 × 10−4 | + | + |
| Fluco. | + | + | + | + | 9.8 × 10−4 | 9.8 × 10−4 |
Percentage inhibition of parasite in mice.
| 8a | 67.0 ± 1.52753 | 33.0 ± 10.01665 | 60.2 ± 12.07159 |
| 8b | 59.7 ± 3.38296 | 23.0 ± 2.08167 | 57.8 ± 15.26055 |
| 8c | 58.3 ± 2.33333 | 51.7 ± 12.83658 | 37.8 ± 15.47055 |
| 8d | 68.7 ± 3.92994 | 47.0 ± 3.21455 | 43.4 ± 3.88344 |
| 8e | 69.3 ± 1.45297 | 38.0 ± 4.00000 | 43.0 ± 14.27737 |
| 8f | 63.0 ± 5.33333 | 74.3 ± 4.40959 | 10.4 ± 5.32301 |
| 8g | 65.0 ± 1.52753 | 45.0 ± 11.93035 | 45.8 ± 14.37370 |
| 8h | 65.7 ± 4.97773 | 42.3 ± 5.48736 | 49.0 ± 6.61421 |
| 8i | 63.3 ± 5.20683 | 48.3 ± 7.96520 | 41.8 ± 9.59103 |
| 8j | 55.3 ± 2.96273 | 31.7 ± 5.78312 | 61.9 ± 6.96799 |
| Arte. | 62.0 ± 0.57735 | 27.0 ± 1.76383 | 67.1 ± 2.11660 |
| NTC | 68.0 ± 1.73205 | 83.0 ± 1.73205 | 0.0 ± 0.0000 |
Arte, Artemisinin; NTC, Non Treated Control.
Values are means of three determinations ± SEM.