Literature DB >> 33328610

Implementation of a 4Pi-SMS super-resolution microscope.

Jingyu Wang1, Edward S Allgeyer2, George Sirinakis2, Yongdeng Zhang3, Kevin Hu3,4, Mark D Lessard3, Yiming Li5,6, Robin Diekmann5, Michael A Phillips7, Ian M Dobbie8, Jonas Ries9, Martin J Booth10, Joerg Bewersdorf11,12.   

Abstract

The development of single-molecule switching (SMS) fluorescence microscopy (also called single-molecule localization microscopy) over the last decade has enabled researchers to image cell biological structures at unprecedented resolution. Using two opposing objectives in a so-called 4Pi geometry doubles the available numerical aperture, and coupling this with interferometric detection has demonstrated 3D resolution down to 10 nm over entire cellular volumes. The aim of this protocol is to enable interested researchers to establish 4Pi-SMS super-resolution microscopy in their laboratories. We describe in detail how to assemble the optomechanical components of a 4Pi-SMS instrument, align its optical beampath and test its performance. The protocol further provides instructions on how to prepare test samples of fluorescent beads, operate this instrument to acquire images of whole cells and analyze the raw image data to reconstruct super-resolution 3D data sets. Furthermore, we provide a troubleshooting guide and present examples of anticipated results. An experienced optical instrument builder will require ~12 months from the start of ordering hardware components to acquiring high-quality biological images.

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Year:  2020        PMID: 33328610      PMCID: PMC9118368          DOI: 10.1038/s41596-020-00428-7

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  20 in total

1.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

2.  Visualization and characterization of individual type III protein secretion machines in live bacteria.

Authors:  Yongdeng Zhang; María Lara-Tejero; Jörg Bewersdorf; Jorge E Galán
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

3.  Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm.

Authors:  Yina Wang; Joerg Schnitzbauer; Zhe Hu; Xueming Li; Yifan Cheng; Zhen-Li Huang; Bo Huang
Journal:  Opt Express       Date:  2014-06-30       Impact factor: 3.894

4.  Single-Molecule Real-Time 3D Imaging of the Transcription Cycle by Modulation Interferometry.

Authors:  Guanshi Wang; Jesse Hauver; Zachary Thomas; Seth A Darst; Alexandros Pertsinidis
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

5.  Distribution of ESCRT machinery at HIV assembly sites reveals virus scaffolding of ESCRT subunits.

Authors:  Schuyler B Van Engelenburg; Gleb Shtengel; Prabuddha Sengupta; Kayoko Waki; Michal Jarnik; Sherimay D Ablan; Eric O Freed; Harald F Hess; Jennifer Lippincott-Schwartz
Journal:  Science       Date:  2014-01-16       Impact factor: 47.728

Review 6.  Super-resolution microscopy demystified.

Authors:  Lothar Schermelleh; Alexia Ferrand; Thomas Huser; Christian Eggeling; Markus Sauer; Oliver Biehlmaier; Gregor P C Drummen
Journal:  Nat Cell Biol       Date:  2019-01-02       Impact factor: 28.824

7.  Ultra-High Resolution 3D Imaging of Whole Cells.

Authors:  Fang Huang; George Sirinakis; Edward S Allgeyer; Lena K Schroeder; Whitney C Duim; Emil B Kromann; Thomy Phan; Felix E Rivera-Molina; Jordan R Myers; Irnov Irnov; Mark Lessard; Yongdeng Zhang; Mary Ann Handel; Christine Jacobs-Wagner; C Patrick Lusk; James E Rothman; Derek Toomre; Martin J Booth; Joerg Bewersdorf
Journal:  Cell       Date:  2016-07-07       Impact factor: 41.582

8.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

9.  Real-time 3D single-molecule localization using experimental point spread functions.

Authors:  Yiming Li; Markus Mund; Philipp Hoess; Joran Deschamps; Ulf Matti; Bianca Nijmeijer; Vilma Jimenez Sabinina; Jan Ellenberg; Ingmar Schoen; Jonas Ries
Journal:  Nat Methods       Date:  2018-04-09       Impact factor: 28.547

10.  Nuclear pores as versatile reference standards for quantitative superresolution microscopy.

Authors:  Jervis Vermal Thevathasan; Maurice Kahnwald; Konstanty Cieśliński; Philipp Hoess; Sudheer Kumar Peneti; Manuel Reitberger; Daniel Heid; Krishna Chaitanya Kasuba; Sarah Janice Hoerner; Yiming Li; Yu-Le Wu; Markus Mund; Ulf Matti; Pedro Matos Pereira; Ricardo Henriques; Bianca Nijmeijer; Moritz Kueblbeck; Vilma Jimenez Sabinina; Jan Ellenberg; Jonas Ries
Journal:  Nat Methods       Date:  2019-09-27       Impact factor: 28.547

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  4 in total

1.  Targeting tumor extracellular matrix activates the tumor-draining lymph nodes.

Authors:  Alexander J Najibi; Ting-Yu Shih; David K Y Zhang; Junzhe Lou; Miguel C Sobral; Hua Wang; Maxence O Dellacherie; Kwasi Adu-Berchie; David J Mooney
Journal:  Cancer Immunol Immunother       Date:  2022-05-07       Impact factor: 6.630

2.  Global fitting for high-accuracy multi-channel single-molecule localization.

Authors:  Yiming Li; Wei Shi; Sheng Liu; Ivana Cavka; Yu-Le Wu; Ulf Matti; Decheng Wu; Simone Koehler; Jonas Ries
Journal:  Nat Commun       Date:  2022-06-06       Impact factor: 17.694

3.  Imaging plant cells and organs with light-sheet and super-resolution microscopy.

Authors:  Miroslav Ovečka; Jiří Sojka; Michaela Tichá; George Komis; Jasim Basheer; Cintia Marchetti; Olga Šamajová; Lenka Kuběnová; Jozef Šamaj
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.340

4.  Exploring Cell Surface-Nanopillar Interactions with 3D Super-Resolution Microscopy.

Authors:  Anish R Roy; Wei Zhang; Zeinab Jahed; Ching-Ting Tsai; Bianxiao Cui; W E Moerner
Journal:  ACS Nano       Date:  2021-09-28       Impact factor: 15.881

  4 in total

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