Literature DB >> 24977854

Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm.

Yina Wang, Joerg Schnitzbauer, Zhe Hu, Xueming Li, Yifan Cheng, Zhen-Li Huang, Bo Huang.   

Abstract

Highly accurate sample drift correction is essential in super-resolution localization microscopy to guarantee a high spatial resolution, especially when the technique is used to visualize small cell organelle. Here we present a localization events-based drift correction method using a redundant cross-correlation algorithm originally developed to correct beam-induced motion in cryo-electron microscopy. With simulated, synthesized as well as experimental data, we have demonstrated its superior precision compared to previously published localization events-based drift correction methods. The major advantage of this method is the robustness when the number of localization events is low, either because a short correction time step is required or because the imaged structure is small and sparse. This method has allowed us to improve the effective resolution when imaging Golgi apparatus in mammalian cells.

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Year:  2014        PMID: 24977854      PMCID: PMC4162368          DOI: 10.1364/OE.22.015982

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  19 in total

1.  Three-dimensional superresolution colocalization of intracellular protein superstructures and the cell surface in live Caulobacter crescentus.

Authors:  Matthew D Lew; Steven F Lee; Jerod L Ptacin; Marissa K Lee; Robert J Twieg; Lucy Shapiro; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-26       Impact factor: 11.205

2.  Ultra-fast, high-precision image analysis for localization-based super resolution microscopy.

Authors:  Tingwei Quan; Pengcheng Li; Fan Long; Shaoqun Zeng; Qingming Luo; Per Niklas Hedde; Gerd Ulrich Nienhaus; Zhen-Li Huang
Journal:  Opt Express       Date:  2010-05-24       Impact factor: 3.894

3.  Subnanometre single-molecule localization, registration and distance measurements.

Authors:  Alexandros Pertsinidis; Yunxiang Zhang; Steven Chu
Journal:  Nature       Date:  2010-07-07       Impact factor: 49.962

4.  Stabilization of an optical microscope to 0.1 nm in three dimensions.

Authors:  Ashley R Carter; Gavin M King; Theresa A Ulrich; Wayne Halsey; David Alchenberger; Thomas T Perkins
Journal:  Appl Opt       Date:  2007-01-20       Impact factor: 1.980

5.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy.

Authors:  Samuel T Hess; Thanu P K Girirajan; Michael D Mason
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

6.  Active Microscope Stabilization in Three Dimensions Using Image Correlation.

Authors:  Ryan McGorty; Daichi Kamiyama; Bo Huang
Journal:  Opt Nanoscopy       Date:  2013-04-18

7.  Sample drift correction in 3D fluorescence photoactivation localization microscopy.

Authors:  Michael J Mlodzianoski; John M Schreiner; Steven P Callahan; Katarina Smolková; Andrea Dlasková; Jitka Santorová; Petr Ježek; Joerg Bewersdorf
Journal:  Opt Express       Date:  2011-08-01       Impact factor: 3.894

8.  Measuring image resolution in optical nanoscopy.

Authors:  Robert P J Nieuwenhuizen; Keith A Lidke; Mark Bates; Daniela Leyton Puig; David Grünwald; Sjoerd Stallinga; Bernd Rieger
Journal:  Nat Methods       Date:  2013-04-28       Impact factor: 28.547

9.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

10.  Ultrabright photoactivatable fluorophores created by reductive caging.

Authors:  Joshua C Vaughan; Shu Jia; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2012-10-28       Impact factor: 28.547

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  50 in total

1.  Optimal Drift Correction for Superresolution Localization Microscopy with Bayesian Inference.

Authors:  Ahmed Elmokadem; Ji Yu
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

2.  Quantitative evaluation of software packages for single-molecule localization microscopy.

Authors:  Daniel Sage; Hagai Kirshner; Thomas Pengo; Nico Stuurman; Junhong Min; Suliana Manley; Michael Unser
Journal:  Nat Methods       Date:  2015-06-15       Impact factor: 28.547

3.  Direct visualization of the arterial wall water permeability barrier using CARS microscopy.

Authors:  Bertrand M Lucotte; Chloe Powell; Jay R Knutson; Christian A Combs; Daniela Malide; Zu-Xi Yu; Mark Knepper; Keval D Patel; Anna Pielach; Errin Johnson; Lyudmyla Borysova; Kim A Dora; Robert S Balaban
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

4.  CTCF and cohesin regulate chromatin loop stability with distinct dynamics.

Authors:  Anders S Hansen; Iryna Pustova; Claudia Cattoglio; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2017-05-03       Impact factor: 8.140

5.  A Simple Marker-Assisted 3D Nanometer Drift Correction Method for Superresolution Microscopy.

Authors:  Hongqiang Ma; Jianquan Xu; Jingyi Jin; Yi Huang; Yang Liu
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

6.  Super-resolution microscopy with DNA-PAINT.

Authors:  Joerg Schnitzbauer; Maximilian T Strauss; Thomas Schlichthaerle; Florian Schueder; Ralf Jungmann
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

7.  Quantitative Localization Microscopy Reveals a Novel Organization of a High-Copy Number Plasmid.

Authors:  Yong Wang; Paul Penkul; Joshua N Milstein
Journal:  Biophys J       Date:  2016-08-09       Impact factor: 4.033

8.  Stochastic Optical Reconstruction Microscopy (STORM).

Authors:  Jianquan Xu; Hongqiang Ma; Yang Liu
Journal:  Curr Protoc Cytom       Date:  2017-07-05

9.  Correlation analysis framework for localization-based superresolution microscopy.

Authors:  Joerg Schnitzbauer; Yina Wang; Shijie Zhao; Matthew Bakalar; Tulip Nuwal; Baohui Chen; Bo Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

10.  Three-Dimensional Single-Molecule Localization Microscopy in Whole-Cell and Tissue Specimens.

Authors:  Sheng Liu; Hyun Huh; Sang-Hyuk Lee; Fang Huang
Journal:  Annu Rev Biomed Eng       Date:  2020-04-03       Impact factor: 9.590

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