Literature DB >> 33324980

Quantifying diagnostic accuracy improvement of new biomarkers for competing risk outcomes.

Zheng Wang1, Yu Cheng2, Eric C Seaberg3, James T Becker4.   

Abstract

The net reclassification improvement (NRI) and the integrated discrimination improvement (IDI) were originally proposed to characterize accuracy improvement in predicting a binary outcome, when new biomarkers are added to regression models. These two indices have been extended from binary outcomes to multi-categorical and survival outcomes. Working on an AIDS study where the onset of cognitive impairment is competing risk censored by death, we extend the NRI and the IDI to competing risk outcomes, by using cumulative incidence functions to quantify cumulative risks of competing events, and adopting the definitions of the two indices for multi-category outcomes. The "missing" category due to independent censoring is handled through inverse probability weighting. Various competing risk models are considered, such as the Fine and Gray, multistate, and multinomial logistic models. Estimation methods for the NRI and the IDI from competing risk data are presented. The inference for the NRI is constructed based on asymptotic normality of its estimator, and the bias-corrected and accelerated bootstrap procedure is used for the IDI. Simulations demonstrate that the proposed inferential procedures perform very well. The Multicenter AIDS Cohort Study is used to illustrate the practical utility of the extended NRI and IDI for competing risk outcomes.
© The Author 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Cumulative incidence function; Fine and Gray’s model; Integrated discrimination improvement; Multinomial logistic model; Multistate model; Net reclassification improvement

Year:  2020        PMID: 33324980      PMCID: PMC9017290          DOI: 10.1093/biostatistics/kxaa048

Source DB:  PubMed          Journal:  Biostatistics        ISSN: 1465-4644            Impact factor:   5.279


  23 in total

1.  When is a new prediction marker useful? A consideration of lipoprotein-associated phospholipase A2 and C-reactive protein for stroke risk.

Authors:  Philip Greenland; Patrick G O'Malley
Journal:  Arch Intern Med       Date:  2005-11-28

2.  Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond.

Authors:  Michael J Pencina; Ralph B D'Agostino; Ralph B D'Agostino; Ramachandran S Vasan
Journal:  Stat Med       Date:  2008-01-30       Impact factor: 2.373

3.  On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data.

Authors:  Hajime Uno; Tianxi Cai; Michael J Pencina; Ralph B D'Agostino; L J Wei
Journal:  Stat Med       Date:  2011-01-13       Impact factor: 2.373

4.  Asymptotic distribution of ∆AUC, NRIs, and IDI based on theory of U-statistics.

Authors:  Olga V Demler; Michael J Pencina; Nancy R Cook; Ralph B D'Agostino
Journal:  Stat Med       Date:  2017-06-19       Impact factor: 2.373

5.  Checking Fine and Gray subdistribution hazards model with cumulative sums of residuals.

Authors:  Jianing Li; Thomas H Scheike; Mei-Jie Zhang
Journal:  Lifetime Data Anal       Date:  2014-11-25       Impact factor: 1.588

6.  Cross-sectional analysis of cognitive function using multivariate normative comparisons in men with HIV disease.

Authors:  Zheng Wang; Samantha A Molsberry; Yu Cheng; Lawrence Kingsley; Andrew J Levine; Eileen Martin; Cynthia A Munro; Ann Ragin; Leah H Rubin; Ned Sacktor; Eric C Seaberg; James T Becker
Journal:  AIDS       Date:  2019-11-15       Impact factor: 4.177

7.  A unified inference procedure for a class of measures to assess improvement in risk prediction systems with survival data.

Authors:  Hajime Uno; Lu Tian; Tianxi Cai; Isaac S Kohane; L J Wei
Journal:  Stat Med       Date:  2012-10-05       Impact factor: 2.373

8.  Evaluating incremental values from new predictors with net reclassification improvement in survival analysis.

Authors:  Yingye Zheng; Layla Parast; Tianxi Cai; Marshall Brown
Journal:  Lifetime Data Anal       Date:  2012-12-20       Impact factor: 1.588

9.  Multivariate normative comparisons.

Authors:  Hilde M Huizenga; Harriet Smeding; Raoul P P P Grasman; Ben Schmand
Journal:  Neuropsychologia       Date:  2007-03-23       Impact factor: 3.139

10.  The Multicenter AIDS Cohort Study: rationale, organization, and selected characteristics of the participants.

Authors:  R A Kaslow; D G Ostrow; R Detels; J P Phair; B F Polk; C R Rinaldo
Journal:  Am J Epidemiol       Date:  1987-08       Impact factor: 4.897

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