Literature DB >> 33321928

Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics.

Violetta R Beklemisheva1, Polina L Perelman1, Natalya A Lemskaya1, Anastasia A Proskuryakova1, Natalya A Serdyukova1, Vladimir N Burkanov2, Maksim B Gorshunov3, Oliver Ryder4, Mary Thompson5, Gina Lento6, Stephen J O'Brien7,8, Alexander S Graphodatsky1.   

Abstract

Pinnipedia karyotype evolution was studied here using human, domestic dog, and stone marten whole-chromosome painting probes to obtain comparative chromosome maps among species of Odobenidae (Odobenus rosmarus), Phocidae (Phoca vitulina, Phoca largha, Phoca hispida, Pusa sibirica, Erignathus barbatus), and Otariidae (Eumetopias jubatus, Callorhinus ursinus, Phocarctos hookeri, and Arctocephalus forsteri). Structural and functional chromosomal features were assessed with telomere repeat and ribosomal-DNA probes and by CBG (C-bands revealed by barium hydroxide treatment followed by Giemsa staining) and CDAG (Chromomycin A3-DAPI after G-banding) methods. We demonstrated diversity of heterochromatin among pinniped karyotypes in terms of localization, size, and nucleotide composition. For the first time, an intrachromosomal rearrangement common for Otariidae and Odobenidae was revealed. We postulate that the order of evolutionarily conserved segments in the analyzed pinnipeds is the same as the order proposed for the ancestral Carnivora karyotype (2n = 38). The evolution of conserved genomes of pinnipeds has been accompanied by few fusion events (less than one rearrangement per 10 million years) and by novel intrachromosomal changes including the emergence of new centromeres and pericentric inversion/centromere repositioning. The observed interspecific diversity of pinniped karyotypes driven by constitutive heterochromatin variation likely has played an important role in karyotype evolution of pinnipeds, thereby contributing to the differences of pinnipeds' chromosome sets.

Entities:  

Keywords:  CBG staining; CDAG banding; chromosome map; constitutive heterochromatin; evolutionary new centromere; fluorescence in situ hybridization; pericentric inversion; rDNA probe; seal; semiaquatic mammal; tandem fusion; telomere repeat; walrus

Year:  2020        PMID: 33321928      PMCID: PMC7763226          DOI: 10.3390/genes11121485

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  72 in total

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Authors:  Ying Tian; Wen-Hui Nie; Jin-Huan Wang; Yun-Fei Yang; Feng-Tang Yang
Journal:  Yi Chuan Xue Bao       Date:  2002-02

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Journal:  Lancet       Date:  1971-10-30       Impact factor: 79.321

Review 5.  Heterochromatic hues of transcription-the diverse roles of noncoding transcripts from constitutive heterochromatin.

Authors:  Parna Saha; Rakesh K Mishra
Journal:  FEBS J       Date:  2019-11-08       Impact factor: 5.542

6.  Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages.

Authors:  Anastasia I Kulemzina; Vladimir A Trifonov; Polina L Perelman; Nadezhda V Rubtsova; Vitaly Volobuev; Malcolm A Ferguson-Smith; Roscoe Stanyon; Fengtang Yang; Alexander S Graphodatsky
Journal:  Chromosome Res       Date:  2009-04-07       Impact factor: 5.239

Review 7.  New Insights into the Regulation of Heterochromatin.

Authors:  Jiyong Wang; Sharon T Jia; Songtao Jia
Journal:  Trends Genet       Date:  2016-03-20       Impact factor: 11.639

8.  A centromere satellite concomitant with extensive karyotypic diversity across the Peromyscus genus defies predictions of molecular drive.

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Journal:  Chromosome Res       Date:  2019-02-15       Impact factor: 5.239

9.  Recruitment to the nuclear periphery can alter expression of genes in human cells.

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Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917

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  2 in total

1.  Genomics of Adaptation and Speciation.

Authors:  Walter W Wolfsberger; Fabia U Battistuzzi; Taras K Oleksyk
Journal:  Genes (Basel)       Date:  2022-07-01       Impact factor: 4.141

2.  A Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of "Genetic Purging" and Genomic Stability.

Authors:  David W Mohr; Stephen J Gaughran; Justin Paschall; Ahmed Naguib; Andy Wing Chun Pang; Olga Dudchenko; Erez Lieberman Aiden; Deanna M Church; Alan F Scott
Journal:  Genes (Basel)       Date:  2022-07-18       Impact factor: 4.141

  2 in total

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