| Literature DB >> 33320879 |
Dagoberto Armenta-Medina1,2, Christian Díaz de León-Castañeda1,2, Brenda Valderrama-Blanco3.
Abstract
In this work, we present a diagnostic analysis of strengths, weaknesses, opportunities and threats (SWOT) of the current state of Bioinformatics in Mexico. We conducted semi-structured interviews among researchers and academics with key expertise in this field, identified by bibliometric analyses and qualitative sampling techniques. Additionally, an online survey was conducted reaching a higher number of respondents. Among the relevant findings of our study, the lack of specialized human resources and technological infrastructure stood out, along with deficiencies in the number and quality of academic programs, scarce public investment and a weak relationship between public and private institutions. However, there are great opportunities for developing a national Bioinformatics to support different economic sectors. In our opinion, this work could be useful to favor a comprehensive network among Mexican researchers, in order to lay the foundations of a national strategy towards a well designed public policy.Entities:
Year: 2020 PMID: 33320879 PMCID: PMC7737905 DOI: 10.1371/journal.pone.0243531
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Timelime of bioinformatics in Mexico.
| Year | Action |
|---|---|
| 1997 | Mexican researchers collaborate in the |
| 2006 | Mexican researchers publish the first large-scale sequencing project: |
| 2006 | Mexican researchers lead the |
| 2003 | The |
| 2004 | The |
| 2005 | The |
| 2007 | The |
| 2007 | The |
| 2015 | The |
| 2012 | The |
| 2015 | The |
| 2019 | The |
aAcronyms:
CCG: Centro de Ciencias Genómicas (UNAM); CINVESTAV: Centro de Investigación y de Estudios Avanzados; LANGEBIO: Laboratorio Nacional de Genómica para la Biodiversidad; SSA: Secretaría de Salud; UNAM: Universidad Nacional Autónoma de México; UAM: Universidad Autónoma Metropolitana; INMEGEN: Instituto Nacional de Medicina Genómica (SSA).
Fig 1Dynamics of publications related to Mexican bioinformatics between 2008 and 2018 (PubMed database).
Respondents selection and profile.
| Respondent number | Sampling technique | Sex | Institution of affiliation | Institution type | Work role | Main economic sectors | Semi-structured interview | Online survey |
|---|---|---|---|---|---|---|---|---|
| 1 | B | M | LANGEBIO-CINVESTAV | N, public | R | M | ✓ | ✓ |
| 2 | B | M | IBT-UNAM | N, public | R, LC | M | ✓ | |
| 3 | B | M | F, public | R | M | ✓ | ||
| 4 | B | M | INMEGEN-SSA | N, public | LC | H | ✓ | |
| 5 | C/O | M | INSP-SSA | N, public | R | H | ✓ | |
| 6 | C/O | M | F, private | EM | H | ✓ | ||
| 7 | C/O | M | ENES-UNAM | N, public | R | M | ✓ | |
| 8 | B | M | TEC-Mty | N, private | R | H | ✓ | ✓ |
| 9 | B | F | IIMAS-UNAM | N, public | R | H | ✓ | |
| 10 | P | M | LANGEBIO-CINVESTAV | N, public | LC | A | ✓ | ✓ |
| 11 | P | F | INMEGEN-UNAM | N, public | LA | H | ✓ | ✓ |
| 12 | B | M | IBT-UNAM | N, public | R, LC | M | ✓ | |
| 13 | P | F | UAEM | N, public | R | H | ✓ | ✓ |
| 14 | C/O | M | ENES-UNAM | N, public | R | M | ✓ | |
| 15 | P | F | LANGEBIO-CINVESTAV | N, public | R | H, A | ✓ | |
| 16 | P | M | CIIDIR-IPN | N, public | R | A | ✓ | |
| 17 | P | M | CCG-UNAM | N, public | LC | M | ✓ | |
| 18 | B | M | CINVESTAV Irapuato | N, public | R, LC | M | ✓ | |
| 19 | B | M | ENCB-IPN | N, public | R | M | ✓ | |
| 20 | P | M | CCG-UNAM | N, public | R | M | ✓ | |
| 21 | P | M | CNyN-UNAM | N, public | R | M | ✓ | |
| 22 | B | M | ESM-IPN | N, public | R | H | ✓ | |
| 23 | P | M | CICESE-CONACYT | N, public | R | H | ✓ | |
| 24 | P | F | N, private | EM | H | ✓ | ||
| 25 | P | M | INECOL-UNAM | N, public | R | M | ✓ | |
| 26 | P | M | IBT-UNAM | N, public | R | M | ✓ |
aAcronyms:
Sampling technique used for respondents selection: B: Bibliometric analysis; P: Purposeful sampling; C/O:Convenience/Opportunity sampling; SB: Snowball sampling.
Sex: M: Male; F: Female
Institution of affiliation:
Public Institutions: CCG: Centro de Ciencias Genómicas; CIIDIR: Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional; CINVESTAV: Centro de Investigación y de Estudios Avanzados; CISESE: Centro de Investigación Científica y de Educación Superior de Ensenada; CNyN: Centro de Nanociencias y Nanotecnología; CONACYT: Consejo Nacional de Ciencia y Tecnología; ENCB: Escuela Nacional de Ciencias Biológicas; ENES: Escuela Nacional de Estudios Superiores; ESM: Escuela Superior de Medicina; IBT: Instituto de Biotecnología; IIMAS: Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas; INMEGEN: Instituto Nacional de Medicina Genómica; INECOL: Instituto de Ecología; INSP: Instituto Nacional de Salud Pública; IPN: Instituto Politécnico Nacional; LANGEBIO: Laboratorio Nacional de Genómica para la Biodiversidad; SSA: Secretaría de Salud; UAEM: Universidad Autónoma del Estado de Morelos; UNAM: Universidad Nacional Autónoma de México.
Private Institutions: TEC-Mty: Instituto Tecnológico de Monterrey.
Institution type: N: National; F: Foreign.
Work role of respondent: R: Researcher; LC: Research/Services Laboratory Chief; LA: Laboratory Analyst; EM: Enterprise manager.
Main economic sectors where respondents work: H: Health care; A: Agricultural; E: Environment; M: Multisector.
Fig 2Respondents’ research in particular economic sectors through bioinformatics.
Fig 3Bioinformatics projects financing sources as stated by respondents.
SWOT analysis summary.
| SWOT | Rank | Item |
|---|---|---|
| 1 | Competitive academic and research levels in life sciences and ICT. | |
| 2 | Diversity among Bioinformatics research interests. | |
| 1 | Lack of human resources and educational programs in Bioinformatics. | |
| 2 | Lack of infrastructure and capacity for the management of computer technology resources. | |
| 3 | Lack of communication between researchers in the field of Bioinformatics. | |
| 4 | Limited availability of sequencing data from Mexican species or human populations. | |
| 5 | Lack of regulatory frameworks on biological data. | |
| 6 | Structural delays in Bioinformatics applications or prototypes developments. | |
| 7 | Excessive bureaucracy in the processes for technical services into the academy. | |
| 1 | Access to international public databases for Bioinformatics analysis. | |
| 2 | Reduction of sequencing costs. | |
| 3 | Availability of free software for Bioinformatics. | |
| 4 | Biological diversity in the country. | |
| 5 | A great interest of the Mexican scientific community in the area of Bioinformatics. | |
| 1 | Limitation of public and private financing towards Bioinformatic projects. | |
| 2 | The exploitation of biological data from Mexican biodiversity in the hands of foreign entities. | |
| 3 | Foreign competition to provide Bioinformatic services, applications or prototype development. | |
| 4 | Academic and business Mexican culture. |