Literature DB >> 30183544

Interethnic Variability in CYP2D6, CYP2C9, and CYP2C19 Genes and Predicted Drug Metabolism Phenotypes Among 6060 Ibero- and Native Americans: RIBEF-CEIBA Consortium Report on Population Pharmacogenomics.

María-Eugenia G Naranjo1,2, Fernanda Rodrigues-Soares1,3,4, Eva M Peñas-Lledó1,2, Eduardo Tarazona-Santos1,3,5, Humberto Fariñas1,2, Idania Rodeiro1,6, Enrique Terán1,7, Manuela Grazina1,8, Graciela E Moya1,9, Marisol López-López1,10, Alba P Sarmiento1,11, Luis R Calzadilla1,12, Ronald Ramírez-Roa1,13, Rocío Ortiz-López1,14, Francisco E Estévez-Carrizo1,15, Martha Sosa-Macías1,16, Ramiro Barrantes1,17, Adrián LLerena1,2.   

Abstract

Pharmacogenetic variation in Latin Americans is understudied, which sets a barrier for the goal of global precision medicine. The RIBEF-CEIBA Network Consortium was established to characterize interindividual and between population variations in CYP2D6, CYP2C9, and CYP2C19 drug metabolizing enzyme genotypes, which were subsequently utilized to catalog their "predicted drug metabolism phenotypes" across Native American and Ibero American populations. Importantly, we report in this study, a total of 6060 healthy individuals from Ibero-America who were classified according to their self-reported ancestry: 1395 Native Americans, 2571 Admixed Latin Americans, 96 Afro-Latin Americans, 287 white Latin Americans (from Cuba), 1537 Iberians, and 174 Argentinean Ashkenazi Jews. Moreover, Native Americans were grouped into North-, Central-, and South Amerindians (from Mexico, Costa Rica, and Peru, respectively). All subjects were studied for the most common and functional CYP2D6, CYP2C9, and CYP2C19 allelic variants, and grouped as genotype-predicted poor or ultrarapid metabolizer phenotypes (gPMs and gUMs, respectively). Native Americans showed differences from each ethnic group in at least two alleles of CYP2D6, CYP2C9, and CYP2C19. Native Americans had higher frequencies of wild-type alleles for all genes, and lower frequency of CYP2D6*41, CYP2C9*2, and CYP2C19*17 (p < 0.05). Native Americans also showed less CYP2C19 gUMs than the rest of the population sample. In addition, differences within Native Americans (mostly North vs. South) were also found. The interethnic differences described supports the need for population-specific personalized and precision medicine programs for Native Americans. To the best of our knowledge, this is the largest study carried out in Native Americans and other Ibero-American populations analyzing CYP2D6, CYP2C9, and CYP2C19 genetic polymorphisms. Population pharmacogenomics is a nascent field of global health and warrants further research and education.

Entities:  

Keywords:  Amerindians; CYP2C19; CYP2C9; CYP2D6; Latin Americans; drug metabolism; pharmacogenetics; precision medicine

Mesh:

Substances:

Year:  2018        PMID: 30183544     DOI: 10.1089/omi.2018.0114

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  11 in total

1.  Novel Insights into Plasmodium vivax Therapeutic Failure: CYP2D6 Activity and Time of Exposure to Malaria Modulate the Risk of Recurrence.

Authors:  Ana Carolina Rios Silvino; Flora Satiko Kano; Marcelo Azevedo Costa; Cor Jesus Fernandes Fontes; Irene Silva Soares; Cristiana Ferreira Alves de Brito; Luzia Helena Carvalho; Tais Nobrega Sousa
Journal:  Antimicrob Agents Chemother       Date:  2020-04-21       Impact factor: 5.191

Review 2.  Genophenotypic Factors and Pharmacogenomics in Adverse Drug Reactions.

Authors:  Ramón Cacabelos; Vinogran Naidoo; Lola Corzo; Natalia Cacabelos; Juan C Carril
Journal:  Int J Mol Sci       Date:  2021-12-10       Impact factor: 5.923

3.  Copy number variation profiling in pharmacogenetics CYP-450 and GST genes in Colombian population.

Authors:  Brian Ramírez; María José Niño-Orrego; Daniel Cárdenas; Kevin Enrique Ariza; Karol Quintero; Nora Constanza Contreras Bravo; Caroll Tamayo-Agudelo; María Alejandra González; Paul Laissue; Dora Janeth Fonseca Mendoza
Journal:  BMC Med Genomics       Date:  2019-07-19       Impact factor: 3.063

Review 4.  The Metabolization Profile of the CYP2D6 Gene in Amerindian Populations: A Review.

Authors:  Luciana P C Leitão; Tatiane P Souza; Juliana C G Rodrigues; Marianne R Fernandes; Sidney Santos; Ney P C Santos
Journal:  Genes (Basel)       Date:  2020-02-28       Impact factor: 4.096

5.  Pharmacogenomic Testing In Pediatrics: Navigating The Ethical, Social, And Legal Challenges.

Authors:  Susanne B Haga
Journal:  Pharmgenomics Pers Med       Date:  2019-10-14

6.  Prevalence of pharmacogenomic variants in 100 pharmacogenes among Southeast Asian populations under the collaboration of the Southeast Asian Pharmacogenomics Research Network (SEAPharm).

Authors:  Chakkaphan Runcharoen; Koya Fukunaga; Insee Sensorn; Nareenart Iemwimangsa; Sommon Klumsathian; Hang Tong; Nam Sy Vo; Ly Le; Tin Maung Hlaing; Myo Thant; Shamsul Mohd Zain; Zahurin Mohamed; Yuh-Fen Pung; Francis Capule; Jose Nevado; Catherine Lynn Silao; Zeina N Al-Mahayri; Bassam R Ali; Rika Yuliwulandari; Kinasih Prayuni; Hilyatuz Zahroh; Dzul Azri Mohamed Noor; Phonepadith Xangsayarath; Dalouny Xayavong; Sengchanh Kounnavong; Somphou Sayasone; Zoe Kordou; Ioannis Liopetas; Athina Tsikrika; Evangelia-Eirini Tsermpini; Maria Koromina; Christina Mitropoulou; George P Patrinos; Aumpika Kesornsit; Angkana Charoenyingwattana; Sukanya Wattanapokayakit; Surakameth Mahasirimongkol; Taisei Mushiroda; Wasun Chantratita
Journal:  Hum Genome Var       Date:  2021-02-04

7.  Whole-Exome Sequencing in Patients Affected by Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis Reveals New Variants Potentially Contributing to the Phenotype.

Authors:  Dora Janeth Fonseca; Adrien Morel; Kevin Llinás-Caballero; David Bolívar-Salazar; Paul Laissue
Journal:  Pharmgenomics Pers Med       Date:  2021-03-01

8.  Bioinformatics in Mexico: A diagnostic from the academic perspective and recommendations for a public policy.

Authors:  Dagoberto Armenta-Medina; Christian Díaz de León-Castañeda; Brenda Valderrama-Blanco
Journal:  PLoS One       Date:  2020-12-15       Impact factor: 3.240

9.  Pharmacogenetics in Psychiatry: Perceived Value and Opinions in a Chilean Sample of Practitioners.

Authors:  Juan Undurraga; Ignacio Bórquez-Infante; Nicolás A Crossley; Miguel L Prieto; Gabriela M Repetto
Journal:  Front Pharmacol       Date:  2021-04-15       Impact factor: 5.810

Review 10.  Meta-analysis of probability estimates of worldwide variation of CYP2D6 and CYP2C19.

Authors:  Anne B Koopmans; Mario H Braakman; David J Vinkers; Hans W Hoek; Peter N van Harten
Journal:  Transl Psychiatry       Date:  2021-02-24       Impact factor: 6.222

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