| Literature DB >> 33313323 |
Longchuan Wu1, Yu Chen1, Jiao Yi1, Yi Zhuang1, Lei Cui1, Chunhui Ye1.
Abstract
OBJECTIVE: To explore the mechanism of action of Bu-Fei-Yi-Shen formula (BFYSF) in treating chronic obstructive pulmonary disease (COPD) based on network pharmacology analysis and molecular docking validation.Entities:
Mesh:
Substances:
Year: 2020 PMID: 33313323 PMCID: PMC7718855 DOI: 10.1155/2020/9105972
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Construction of the BFYSF pharmacodynamic ingredient-target network. The active compounds (compounds ID) collected from different herbal medicines were linked with corresponding targets to construct the pharmacodynamic ingredient-target network, where a node indicates an active compound (the different colors of squares stand for different herbal medicines) and the target (green circles).
Figure 2Excavation of core components and targets of BFYSF in treating COPD. (a) The Venn diagram showed that 65 potential targets in BFYSF were the same as the known pathological course-related targets of COPD. (b) The candidate component-target network of BFYSF in treating COPD. (c) The core component-target network of BFYSF in treating COPD.
Degree values of core targets for BFYSF against COPD.
| Targets name | Degree |
|---|---|
| PTGS2 | 29 |
| PPARG | 24 |
| NOS2 | 24 |
| NOS3 | 19 |
| NR3C1 | 17 |
| MAPK14 | 15 |
| JUN | 5 |
| CASP3 | 5 |
| BCL2 | 5 |
| HTR2A | 4 |
| TGFB1 | 3 |
| RELA | 3 |
| PON1 | 3 |
| PLAU | 3 |
| IL1B | 3 |
| IFNG | 3 |
| ALOX5 | 3 |
| ALB | 3 |
| VEGFA | 2 |
| VCAM1 | 2 |
| TP53 | 2 |
| TNF | 2 |
| STAT1 | 2 |
| SELE | 2 |
| NFKBIA | 2 |
| MPO | 2 |
| MMP1 | 2 |
| IL6 | 2 |
| ICAM1 | 2 |
| HMOX1 | 2 |
| GSTP1 | 2 |
| GSTM2 | 2 |
| GSTM1 | 2 |
| CYP1A2 | 2 |
| CYP1A1 | 2 |
| CHRM5 | 2 |
| AKT1 | 2 |
30 core pharmacologically active ingredients of BFYSF in the treatment of COPD.
| Compound no. | Degree in core network | Compound name |
|---|---|---|
| MOL000098 | 57 | Quercetin |
| MOL000422 | 24 | Kaempferol |
| MOL000358 | 21 | Beta-sitosterol |
| MOL000449 | 13 | Stigmasterol |
| MOL000392 | 8 | Formononetin |
| MOL000378 | 7 | 7-O-Methylisomucronulatol |
| MOL000354 | 6 | Isorhamnetin |
| MOL005344 | 6 | Ginsenoside rh2 |
| MOL008457 | 6 | Tetrahydroalstonine |
| MOL000043 | 5 | Atractylenolide I |
| MOL000371 | 5 | 3,9-Di-O-methylnissolin |
| MOL000554 | 5 | Gallic acid-3-O-(6′-O-galloyl)-glucoside |
| MOL000239 | 4 | Jaranol |
| MOL000296 | 4 | Hederagenin |
| MOL000380 | 4 | (6aR,11aR)-9,10-Dimethoxy-6a,11a-dihydro-6H-benzofurano[3,2-c]chromen-3-ol |
| MOL000417 | 4 | Calycosin |
| MOL000442 | 4 | 1,7-Dihydroxy-3,9-dimethoxy pterocarpene |
| MOL000908 | 4 | Beta-elemene |
| MOL004426 | 4 | Icariresinol |
| MOL005530 | 4 | Hydroxygenkwanin |
| MOL000049 | 3 | 3 |
| MOL000022 | 3 | 14-Acetyl-12-senecioyl-2E,8Z,10E-atractylentriol |
| MOL000044 | 3 | Atractylenolide II |
| MOL000072 | 3 | 8 |
| MOL000359 | 2 | Sitosterol |
| MOL000387 | 2 | Bifendate |
| MOL001494 | 2 | Mandenol |
| MOL001495 | 2 | Ethyl linolenate |
| MOL002883 | 2 | Ethyl oleate (NF) |
| MOL005503 | 2 | Cornudentanone |
Virtual docking of core bioactive ingredients and core targets for BFYSF in treating COPD.
| Core ingredients | Binding energy/(kcal mol−1) | |||
|---|---|---|---|---|
| PTGS2 | PPARG | NOS2 | NR3C1 | |
| MOL000043 | -7.2 | -6.9 | -7.8 | -7.8 |
| MOL000098 | -9.6 | -8.4 | -9.1 | -8.4 |
| MOL000358 | -4.8 | -5.4 | -6.9 | -9.3 |
| MOL000392 | -7.3 | -8.3 | -8.3 | -7.2 |
| MOL000422 | -9.5 | -8.3 | -8.6 | -8.2 |
| MOL000449 | -5.2 | -6.2 | -7.4 | -9.5 |
| MOL000554 | -6 | -8.7 | -9 | -7.8 |
| MOL004426 | -6 | -6.8 | -7.5 | -7.6 |
| MOL005344 | -8.9 | -6.2 | -7.5 | -4.3 |
Figure 3Virtual docking of core components and core targets of BFYSF in treating COPD. The virtual docking of quercetin with PTGS2 (a) and NOS2 (c), respectively. (b) The docking of PPARG with gallic acid-3-O-(6′-O-galloyl)-glucosid. (d) The virtual docking of stigmasterol with NRC31.
Figure 4Omicshare-based enrichment analysis of core targets of BFYSF in treating COPD. The top twenty enriched GO-biological process (a) terms along with KEGG pathways (b) are shown. The abscissa corresponds to the GO terms or KEGG pathways, and the ordinate shows the enrichment factor. The color of the dot represents the adjusted p value/q value, and the size of the dot represents the number of core targets mapped to the reference GO terms or pathways.