Literature DB >> 19933260

Update of TTD: Therapeutic Target Database.

Feng Zhu1, BuCong Han, Pankaj Kumar, XiangHui Liu, XiaoHua Ma, Xiaona Wei, Lu Huang, YangFan Guo, LianYi Han, ChanJuan Zheng, YuZong Chen.   

Abstract

Increasing numbers of proteins, nucleic acids and other molecular entities have been explored as therapeutic targets, hundreds of which are targets of approved and clinical trial drugs. Knowledge of these targets and corresponding drugs, particularly those in clinical uses and trials, is highly useful for facilitating drug discovery. Therapeutic Target Database (TTD) has been developed to provide information about therapeutic targets and corresponding drugs. In order to accommodate increasing demand for comprehensive knowledge about the primary targets of the approved, clinical trial and experimental drugs, numerous improvements and updates have been made to TTD. These updates include information about 348 successful, 292 clinical trial and 1254 research targets, 1514 approved, 1212 clinical trial and 2302 experimental drugs linked to their primary targets (3382 small molecule and 649 antisense drugs with available structure and sequence), new ways to access data by drug mode of action, recursive search of related targets or drugs, similarity target and drug searching, customized and whole data download, standardized target ID, and significant increase of data (1894 targets, 560 diseases and 5028 drugs compared with the 433 targets, 125 diseases and 809 drugs in the original release described in previous paper). This database can be accessed at http://bidd.nus.edu.sg/group/cjttd/TTD.asp.

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Year:  2009        PMID: 19933260      PMCID: PMC2808971          DOI: 10.1093/nar/gkp1014

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  37 in total

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Review 2.  Structural genomics: the ultimate approach for rational drug design.

Authors:  Kenneth Lundstrom
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Review 3.  Multi-target therapeutics: when the whole is greater than the sum of the parts.

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Journal:  Drug Discov Today       Date:  2006-11-28       Impact factor: 7.851

4.  Benchmarking sets for molecular docking.

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5.  Do structurally similar ligands bind in a similar fashion?

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Journal:  J Med Chem       Date:  2006-11-16       Impact factor: 7.446

Review 6.  How many drug targets are there?

Authors:  John P Overington; Bissan Al-Lazikani; Andrew L Hopkins
Journal:  Nat Rev Drug Discov       Date:  2006-12       Impact factor: 84.694

Review 7.  Therapeutic targets: progress of their exploration and investigation of their characteristics.

Authors:  C J Zheng; L Y Han; C W Yap; Z L Ji; Z W Cao; Y Z Chen
Journal:  Pharmacol Rev       Date:  2006-06       Impact factor: 25.468

Review 8.  Drugs, their targets and the nature and number of drug targets.

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Journal:  Nat Rev Drug Discov       Date:  2006-10       Impact factor: 84.694

Review 9.  Pharmacogenomics and individualized drug therapy.

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Journal:  Annu Rev Med       Date:  2006       Impact factor: 13.739

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Authors:  David S Wishart; Craig Knox; An Chi Guo; Savita Shrivastava; Murtaza Hassanali; Paul Stothard; Zhan Chang; Jennifer Woolsey
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  96 in total

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Review 3.  Bioinformatics and systems biology of the lipidome.

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Authors:  Saber A Akhondi; Kristina M Hettne; Eelke van der Horst; Erik M van Mulligen; Jan A Kors
Journal:  J Cheminform       Date:  2015-01-19       Impact factor: 5.514

Review 5.  Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling.

Authors:  Linlin Zhao; Heather L Ciallella; Lauren M Aleksunes; Hao Zhu
Journal:  Drug Discov Today       Date:  2020-07-11       Impact factor: 7.851

Review 6.  Systems approaches to polypharmacology and drug discovery.

Authors:  Aislyn D W Boran; Ravi Iyengar
Journal:  Curr Opin Drug Discov Devel       Date:  2010-05

7.  Properties of protein drug target classes.

Authors:  Simon C Bull; Andrew J Doig
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

8.  PreDTIs: prediction of drug-target interactions based on multiple feature information using gradient boosting framework with data balancing and feature selection techniques.

Authors:  S M Hasan Mahmud; Wenyu Chen; Yongsheng Liu; Md Abdul Awal; Kawsar Ahmed; Md Habibur Rahman; Mohammad Ali Moni
Journal:  Brief Bioinform       Date:  2021-03-12       Impact factor: 11.622

9.  Cancer Driver Log (CanDL): Catalog of Potentially Actionable Cancer Mutations.

Authors:  Senthilkumar Damodaran; Jharna Miya; Esko Kautto; Eliot Zhu; Eric Samorodnitsky; Jharna Datta; Julie W Reeser; Sameek Roychowdhury
Journal:  J Mol Diagn       Date:  2015-09       Impact factor: 5.568

10.  The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources.

Authors:  Guy R Cochrane; Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2009-12-03       Impact factor: 16.971

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