Literature DB >> 33302399

The Longitudinal Superdiffusive Motion of Block Copolymer in a Tight Nanopore.

Waldemar Nowicki1.   

Abstract

The structure and dynamic properties of polymer chains in a confined environment were studied by means of the Monte Carlo method. The studied chains were represented by coarse-grained models and embedded into a simple 3D cubic lattice. The chains stood for two-block linear copolymers of different energy of bead-bead interactions. Their behavior was studied in a nanotube formed by four impenetrable surfaces. The long-time unidirectional motion of the chain in the tight nanopore was found to be correlated with the orientation of both parts of the copolymer along the length of the nanopore. A possible mechanism of the anomalous diffusion was proposed on the basis of thermodynamics of the system, more precisely on the free energy barrier of the swapping of positions of both parts of the chain and the impulse of temporary forces induced by variation of the chain conformation. The mean bead and the mass center autocorrelation functions were examined. While the former function behaves classically, the latter indicates the period of time of superdiffusive motion similar to the ballistic motion with the autocorrelation function scaling with the exponent t5/3. A distribution of periods of time of chain diffusion between swapping events was found and discussed. The influence of the nanotube width and the chain length on the polymer diffusivity was studied.

Entities:  

Keywords:  Monte Carlo method; diffusion; lattice model

Year:  2020        PMID: 33302399      PMCID: PMC7762597          DOI: 10.3390/polym12122931

Source DB:  PubMed          Journal:  Polymers (Basel)        ISSN: 2073-4360            Impact factor:   4.329


  28 in total

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Journal:  Nat Mater       Date:  2003-09       Impact factor: 43.841

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4.  Time scale of entropic segregation of flexible polymers in confinement: implications for chromosome segregation in filamentous bacteria.

Authors:  Axel Arnold; Suckjoon Jun
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-09-05

5.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
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6.  Conformation and dynamics of model polymer in connected chamber-pore system.

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Journal:  J Chem Phys       Date:  2009-12-07       Impact factor: 3.488

Review 7.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

8.  Physics. Brownian motion goes ballistic.

Authors:  Peter N Pusey
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

Review 9.  Anomalous transport in the crowded world of biological cells.

Authors:  Felix Höfling; Thomas Franosch
Journal:  Rep Prog Phys       Date:  2013-03-12

Review 10.  Non-Brownian diffusion in lipid membranes: Experiments and simulations.

Authors:  R Metzler; J-H Jeon; A G Cherstvy
Journal:  Biochim Biophys Acta       Date:  2016-01-28
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