Literature DB >> 17979390

Unexpected relaxation dynamics of a self-avoiding polymer in cylindrical confinement.

Axel Arnold1, Behnaz Bozorgui, Daan Frenkel, Bae-Yeun Ha, Suckjoon Jun.   

Abstract

We report extensive simulations of the relaxation dynamics of a self-avoiding polymer confined inside a cylindrical pore. In particular, we concentrate on examining how confinement influences the scaling behavior of the global relaxation time of the chain, tau, with the chain length N and pore diameter D. An earlier scaling analysis based on the de Gennes blob picture led to tau approximately N(2)D(13). Our numerical effort that combines molecular dynamics and Monte Carlo simulations, however, consistently produces different tau results for N up to 2000. We argue that the previous scaling prediction is only asymptotically valid in the limit N"D(53)"1, which is currently inaccessible to computer simulations and, more interestingly, is also difficult to reach in experiments. Our results are thus relevant for the interpretation of recent experiments with DNA in nano- and microchannels.

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Year:  2007        PMID: 17979390     DOI: 10.1063/1.2799513

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

2.  A model for segregation of chromatin after replication: segregation of identical flexible chains in solution.

Authors:  Ron Dockhorn; Jens-Uwe Sommer
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

3.  Density fluctuations dispersion relationship for a polymer confined to a nanotube.

Authors:  Joshua H Carpenter; Alena Karpusenko; Junhan Pan; Shuang Fang Lim; Robert Riehn
Journal:  Appl Phys Lett       Date:  2011-06-21       Impact factor: 3.791

4.  Electrostatic/entropic macromolecule manipulation in nanochannel. Swapping of macromolecule locations.

Authors:  Waldemar Nowicki
Journal:  J Mol Model       Date:  2019-08-24       Impact factor: 1.810

Review 5.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

6.  Simulation of DNA Extension in Nanochannels.

Authors:  Yanwei Wang; Douglas R Tree; Kevin D Dorfman
Journal:  Macromolecules       Date:  2011-08-23       Impact factor: 5.985

7.  Kirkwood diffusivity of long semiflexible chains in nanochannel confinement.

Authors:  Abhiram Muralidhar; Kevin D Dorfman
Journal:  Macromolecules       Date:  2015-04-28       Impact factor: 5.985

8.  A ring-polymer model shows how macromolecular crowding controls chromosome-arm organization in Escherichia coli.

Authors:  Chanil Jeon; Youngkyun Jung; Bae-Yeun Ha
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

9.  The Longitudinal Superdiffusive Motion of Block Copolymer in a Tight Nanopore.

Authors:  Waldemar Nowicki
Journal:  Polymers (Basel)       Date:  2020-12-08       Impact factor: 4.329

10.  Topological Friction and Relaxation Dynamics of Spatially Confined Catenated Polymers.

Authors:  Giulia Amici; Michele Caraglio; Enzo Orlandini; Cristian Micheletti
Journal:  ACS Macro Lett       Date:  2021-12-13       Impact factor: 6.903

  10 in total

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