Literature DB >> 33302373

Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy.

Manikandan Muthu1, Sechul Chun1, Judy Gopal1, Vimala Anthonydhason2, Steve W Haga3, Anna Jacintha Prameela Devadoss1, Jae-Wook Oh4.   

Abstract

Glycosylation plays a crucial role in various diseases and their etiology. This has led to a clear understanding on the functions of n class="Chemical">carbohydrates in cell communication, which eventually will result in novel therapeutic approaches for treatment of various disease. Glycomics has now become one among the top ten technologies that will change the future. The direct implication of glycosylation as a hallmark of cancer and for cancer therapy is well established. As in proteomics, where bioinformatics tools have led to revolutionary achievements, bioinformatics resources for glycosylation have improved its practical implication. Bioinformatics tools, algorithms and databases are a mandatory requirement to manage and successfully analyze large amount of glycobiological data generated from glycosylation studies. This review consolidates all the available tools and their applications in glycosylation research. The achievements made through the use of bioinformatics into glycosylation studies are also presented. The importance of glycosylation in cancer diagnosis and therapy is discussed and the gap in the application of widely available glyco-informatic tools for cancer research is highlighted. This review is expected to bring an awakening amongst glyco-informaticians as well as cancer biologists to bridge this gap, to exploit the available glyco-informatic tools for cancer.

Entities:  

Keywords:  bioinformatics tools; cancer; databases; glycosylation; post translational modification; proteins

Year:  2020        PMID: 33302373      PMCID: PMC7762546          DOI: 10.3390/ijms21249336

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  169 in total

Review 1.  Bioinformatics in the post-genome era.

Authors:  Ungsik Yu; Sung Hoon Lee; Young Joo Kim; Sangsoo Kim
Journal:  J Biochem Mol Biol       Date:  2004-01-31

2.  GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update.

Authors:  Catherine A Cooper; Hiren J Joshi; Mathew J Harrison; Marc R Wilkins; Nicolle H Packer
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 3.  Glycosylation as a marker for inflammatory arthritis.

Authors:  Simone Albrecht; Louise Unwin; Mohankumar Muniyappa; Pauline M Rudd
Journal:  Cancer Biomark       Date:  2014-01-01       Impact factor: 4.388

4.  ASCO 2006 update of recommendations for the use of tumor markers in gastrointestinal cancer.

Authors:  Gershon Y Locker; Stanley Hamilton; Jules Harris; John M Jessup; Nancy Kemeny; John S Macdonald; Mark R Somerfield; Daniel F Hayes; Robert C Bast
Journal:  J Clin Oncol       Date:  2006-10-23       Impact factor: 44.544

Review 5.  Glycans and glycoproteins as specific biomarkers for cancer.

Authors:  Muchena J Kailemia; Dayoung Park; Carlito B Lebrilla
Journal:  Anal Bioanal Chem       Date:  2016-09-03       Impact factor: 4.142

6.  Expression and biochemical characterization of recombinant human epididymis protein 4.

Authors:  Ling Hua; Yunhui Liu; Shuai Zhen; Deyou Wan; Jiyue Cao; Xin Gao
Journal:  Protein Expr Purif       Date:  2014-08-13       Impact factor: 1.650

7.  Ovarian cancer antigen CA125 is encoded by the MUC16 mucin gene.

Authors:  Beatrice W T Yin; Ann Dnistrian; Kenneth O Lloyd
Journal:  Int J Cancer       Date:  2002-04-10       Impact factor: 7.396

8.  Biochemical importance of glycosylation of plasminogen activator inhibitor-1.

Authors:  Ann Gils; Katrine E Pedersen; Peter Skottrup; Anni Christensen; Dominik Naessens; Johanna Deinum; Jan J Enghild; Paul J Declerck; Peter A Andreasen
Journal:  Thromb Haemost       Date:  2003-08       Impact factor: 5.249

9.  Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk.

Authors:  Connie A Remoroza; Tytus D Mak; Maria Lorna A De Leoz; Yuri A Mirokhin; Stephen E Stein
Journal:  Anal Chem       Date:  2018-07-17       Impact factor: 6.986

10.  GlycomeDB - integration of open-access carbohydrate structure databases.

Authors:  René Ranzinger; Stephan Herget; Thomas Wetter; Claus-Wilhelm von der Lieth
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169

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