Literature DB >> 12520065

GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update.

Catherine A Cooper1, Hiren J Joshi, Mathew J Harrison, Marc R Wilkins, Nicolle H Packer.   

Abstract

GlycoSuiteDB is an annotated and curated relational database of glycan structures reported in the literature. It contains information on the glycan type, core type, linkages and anomeric configurations, mass, composition and the analytical methods used by the researchers to determine the glycan structure. Native and recombinant sources are detailed, including species, tissue and/or cell type, cell line, strain, life stage, disease, and if known the protein to which the glycan structures are attached. There are links to SWISS-PROT/TrEMBL and PubMed where applicable. Recent developments include the implementation of searching by 2D structure and substructure, disease and reference. The database is updated twice a year, and now contains over 7650 entries. Access to GlycoSuiteDB is available at http://www.glycosuite.com.

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Year:  2003        PMID: 12520065      PMCID: PMC165546          DOI: 10.1093/nar/gkg099

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Data standardisation in GlycoSuiteDB.

Authors:  C A Cooper; M J Harrison; J M Webster; M R Wilkins; N H Packer
Journal:  Pac Symp Biocomput       Date:  2002

2.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; C Chappey; A E Lash; D D Leipe; T L Madden; G D Schuler; T A Tatusova; B A Rapp
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

Authors:  C A Cooper; E Gasteiger; N H Packer
Journal:  Proteomics       Date:  2001-02       Impact factor: 3.984

5.  The role of site-specific N-glycosylation in secretion of soluble forms of rabies virus glycoprotein.

Authors:  B S Wojczyk; M Stwora-Wojczyk; S Shakin-Eshleman; W H Wunner; S L Spitalnik
Journal:  Glycobiology       Date:  1998-02       Impact factor: 4.313

Review 6.  Proteome and glycosylation mapping identifies post-translational modifications associated with aggressive breast cancer.

Authors:  M V Dwek; H A Ross; A J Leathem
Journal:  Proteomics       Date:  2001-06       Impact factor: 3.984

7.  GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources.

Authors:  C A Cooper; M J Harrison; M R Wilkins; N H Packer
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  7 in total
  39 in total

Review 1.  Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data.

Authors:  Gang Liu; Sriram Neelamegham
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-04-13

2.  Congruent strategies for carbohydrate sequencing. 2. FragLib: an MSn spectral library.

Authors:  Hailong Zhang; Suddham Singh; Vernon N Reinhold
Journal:  Anal Chem       Date:  2005-10-01       Impact factor: 6.986

3.  Automated interpretation of MS/MS spectra of oligosaccharides.

Authors:  Haixu Tang; Yehia Mechref; Milos V Novotny
Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

Review 4.  Systems glycobiology: biochemical reaction networks regulating glycan structure and function.

Authors:  Sriram Neelamegham; Gang Liu
Journal:  Glycobiology       Date:  2011-03-24       Impact factor: 4.313

5.  GlycoRDF: an ontology to standardize glycomics data in RDF.

Authors:  Rene Ranzinger; Kiyoko F Aoki-Kinoshita; Matthew P Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip Toukach; Masaaki Matsubara; Issaku Yamada; Hisashi Narimatsu
Journal:  Bioinformatics       Date:  2014-11-11       Impact factor: 6.937

6.  Automatic determination of O-glycan structure from fragmentation spectra.

Authors:  David Goldberg; Marshall Bern; Bensheng Li; Carlito B Lebrilla
Journal:  J Proteome Res       Date:  2006-06       Impact factor: 4.466

Review 7.  Using databases and web resources for glycomics research.

Authors:  Kiyoko F Aoki-Kinoshita
Journal:  Mol Cell Proteomics       Date:  2013-01-16       Impact factor: 5.911

8.  The glycolyzer: automated glycan annotation software for high performance mass spectrometry and its application to ovarian cancer glycan biomarker discovery.

Authors:  Scott R Kronewitter; Maria Lorna A De Leoz; John S Strum; Hyun Joo An; Lauren M Dimapasoc; Andrés Guerrero; Suzanne Miyamoto; Carlito B Lebrilla; Gary S Leiserowitz
Journal:  Proteomics       Date:  2012-08       Impact factor: 3.984

9.  GlycoViewer: a tool for visual summary and comparative analysis of the glycome.

Authors:  Hiren J Joshi; Claus-Wilhelm von der Lieth; Nicolle H Packer; Marc R Wilkins
Journal:  Nucleic Acids Res       Date:  2010-05-25       Impact factor: 16.971

Review 10.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

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