Literature DB >> 33291220

The International Virus Bioinformatics Meeting 2020.

Franziska Hufsky1,2, Niko Beerenwinkel1,3,4, Irmtraud M Meyer1,5,6, Simon Roux7, Georgia May Cook1,8, Cormac M Kinsella1,9, Kevin Lamkiewicz1,2, Mike Marquet1,10, David F Nieuwenhuijse1,11, Ingrida Olendraite1,8, Sofia Paraskevopoulou1,12, Francesca Young13, Ronald Dijkman1,14,15,16, Bashar Ibrahim1,17,18, Jenna Kelly1,14, Philippe Le Mercier1,19, Manja Marz1,2, Alban Ramette1,16, Volker Thiel1,14.   

Abstract

The International Virus Bioinformatics Meeting 2020 was originally planned to take place in Bern, Switzerland, in March 2020. However, the COVID-19 pandemic put a spoke in the wheel of almost all conferences to be held in 2020. After moving the conference to 8-9 October 2020, we got hit by the second wave and finally decided at short notice to go fully online. On the other hand, the pandemic has made us even more aware of the importance of accelerating research in viral bioinformatics. Advances in bioinformatics have led to improved approaches to investigate viral infections and outbreaks. The International Virus Bioinformatics Meeting 2020 has attracted approximately 120 experts in virology and bioinformatics from all over the world to join the two-day virtual meeting. Despite concerns being raised that virtual meetings lack possibilities for face-to-face discussion, the participants from this small community created a highly interactive scientific environment, engaging in lively and inspiring discussions and suggesting new research directions and questions. The meeting featured five invited and twelve contributed talks, on the four main topics: (1) proteome and RNAome of RNA viruses, (2) viral metagenomics and ecology, (3) virus evolution and classification and (4) viral infections and immunology. Further, the meeting featured 20 oral poster presentations, all of which focused on specific areas of virus bioinformatics. This report summarizes the main research findings and highlights presented at the meeting.

Entities:  

Keywords:  COVID-19; genome evolution; identification; metagenomics; software; viral diversity; viral taxonomy; virology; virome; virus bioinformatics

Mesh:

Year:  2020        PMID: 33291220      PMCID: PMC7762161          DOI: 10.3390/v12121398

Source DB:  PubMed          Journal:  Viruses        ISSN: 1999-4915            Impact factor:   5.048


  61 in total

1.  An evolutionary model for protein-coding regions with conserved RNA structure.

Authors:  Jakob Skou Pedersen; Roald Forsberg; Irmtraud Margret Meyer; Jotun Hein
Journal:  Mol Biol Evol       Date:  2004-06-30       Impact factor: 16.240

2.  Consensus statement: Virus taxonomy in the age of metagenomics.

Authors:  Peter Simmonds; Mike J Adams; Mária Benkő; Mya Breitbart; J Rodney Brister; Eric B Carstens; Andrew J Davison; Eric Delwart; Alexander E Gorbalenya; Balázs Harrach; Roger Hull; Andrew M Q King; Eugene V Koonin; Mart Krupovic; Jens H Kuhn; Elliot J Lefkowitz; Max L Nibert; Richard Orton; Marilyn J Roossinck; Sead Sabanadzovic; Matthew B Sullivan; Curtis A Suttle; Robert B Tesh; René A van der Vlugt; Arvind Varsani; F Murilo Zerbini
Journal:  Nat Rev Microbiol       Date:  2017-01-03       Impact factor: 60.633

3.  Transient RNA structure features are evolutionarily conserved and can be computationally predicted.

Authors:  Jing Yun A Zhu; Adi Steif; Jeff R Proctor; Irmtraud M Meyer
Journal:  Nucleic Acids Res       Date:  2013-04-26       Impact factor: 16.971

4.  R-CHIE: a web server and R package for visualizing RNA secondary structures.

Authors:  Daniel Lai; Jeff R Proctor; Jing Yun A Zhu; Irmtraud M Meyer
Journal:  Nucleic Acids Res       Date:  2012-03-19       Impact factor: 16.971

5.  IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.

Authors:  David Paez-Espino; Simon Roux; I-Min A Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T B K Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A Eloe-Fadrosh; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

6.  Minimum Information about an Uncultivated Virus Genome (MIUViG).

Authors:  Simon Roux; Evelien M Adriaenssens; Bas E Dutilh; Eugene V Koonin; Andrew M Kropinski; Mart Krupovic; Jens H Kuhn; Rob Lavigne; J Rodney Brister; Arvind Varsani; Clara Amid; Ramy K Aziz; Seth R Bordenstein; Peer Bork; Mya Breitbart; Guy R Cochrane; Rebecca A Daly; Christelle Desnues; Melissa B Duhaime; Joanne B Emerson; François Enault; Jed A Fuhrman; Pascal Hingamp; Philip Hugenholtz; Bonnie L Hurwitz; Natalia N Ivanova; Jessica M Labonté; Kyung-Bum Lee; Rex R Malmstrom; Manuel Martinez-Garcia; Ilene Karsch Mizrachi; Hiroyuki Ogata; David Páez-Espino; Marie-Agnès Petit; Catherine Putonti; Thomas Rattei; Alejandro Reyes; Francisco Rodriguez-Valera; Karyna Rosario; Lynn Schriml; Frederik Schulz; Grieg F Steward; Matthew B Sullivan; Shinichi Sunagawa; Curtis A Suttle; Ben Temperton; Susannah G Tringe; Rebecca Vega Thurber; Nicole S Webster; Katrine L Whiteson; Steven W Wilhelm; K Eric Wommack; Tanja Woyke; Kelly C Wrighton; Pelin Yilmaz; Takashi Yoshida; Mark J Young; Natalya Yutin; Lisa Zeigler Allen; Nikos C Kyrpides; Emiley A Eloe-Fadrosh
Journal:  Nat Biotechnol       Date:  2018-12-17       Impact factor: 54.908

Review 7.  The human gut virome: a multifaceted majority.

Authors:  Lesley A Ogilvie; Brian V Jones
Journal:  Front Microbiol       Date:  2015-09-11       Impact factor: 5.640

8.  Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Authors:  Bashar Ibrahim; Ksenia Arkhipova; Arno C Andeweg; Susana Posada-Céspedes; François Enault; Arthur Gruber; Eugene V Koonin; Anne Kupczok; Philippe Lemey; Alice C McHardy; Dino P McMahon; Brett E Pickett; David L Robertson; Richard H Scheuermann; Alexandra Zhernakova; Mark P Zwart; Alexander Schönhuth; Bas E Dutilh; Manja Marz
Journal:  Viruses       Date:  2018-05-14       Impact factor: 5.048

9.  Origins and Evolution of the Global RNA Virome.

Authors:  Yuri I Wolf; Darius Kazlauskas; Jaime Iranzo; Adriana Lucía-Sanz; Jens H Kuhn; Mart Krupovic; Valerian V Dolja; Eugene V Koonin
Journal:  mBio       Date:  2018-11-27       Impact factor: 7.867

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  3 in total

Review 1.  Detangling the Crosstalk Between Ascaris, Trichuris and Gut Microbiota: What´s Next?

Authors:  Sergio Castañeda; Alberto Paniz-Mondolfi; Juan David Ramírez
Journal:  Front Cell Infect Microbiol       Date:  2022-05-25       Impact factor: 6.073

2.  The International Virus Bioinformatics Meeting 2022.

Authors:  Franziska Hufsky; Denis Beslic; Dimitri Boeckaerts; Sebastian Duchene; Enrique González-Tortuero; Andreas J Gruber; Jiarong Guo; Daan Jansen; John Juma; Kunaphas Kongkitimanon; Antoni Luque; Muriel Ritsch; Gabriel Lencioni Lovate; Luca Nishimura; Célia Pas; Esteban Domingo; Emma Hodcroft; Philippe Lemey; Matthew B Sullivan; Friedemann Weber; Fernando González-Candelas; Sarah Krautwurst; Alba Pérez-Cataluña; Walter Randazzo; Gloria Sánchez; Manja Marz
Journal:  Viruses       Date:  2022-05-05       Impact factor: 5.818

3.  Women in the European Virus Bioinformatics Center.

Authors:  Franziska Hufsky; Ana Abecasis; Patricia Agudelo-Romero; Magda Bletsa; Katherine Brown; Claudia Claus; Stefanie Deinhardt-Emmer; Li Deng; Caroline C Friedel; María Inés Gismondi; Evangelia Georgia Kostaki; Denise Kühnert; Urmila Kulkarni-Kale; Karin J Metzner; Irmtraud M Meyer; Laura Miozzi; Luca Nishimura; Sofia Paraskevopoulou; Alba Pérez-Cataluña; Janina Rahlff; Emma Thomson; Charlotte Tumescheit; Lia van der Hoek; Lore Van Espen; Anne-Mieke Vandamme; Maryam Zaheri; Neta Zuckerman; Manja Marz
Journal:  Viruses       Date:  2022-07-12       Impact factor: 5.818

  3 in total

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