Literature DB >> 33290209

Robust and Interpretable Convolutional Neural Networks to Detect Glaucoma in Optical Coherence Tomography Images.

Kaveri A Thakoor, Sharath C Koorathota, Donald C Hood, Paul Sajda.   

Abstract

Recent studies suggest that deep learning systems can now achieve performance on par with medical experts in diagnosis of disease. A prime example is in the field of ophthalmology, where convolutional neural networks (CNNs) have been used to detect retinal and ocular diseases. However, this type of artificial intelligence (AI) has yet to be adopted clinically due to questions regarding robustness of the algorithms to datasets collected at new clinical sites and a lack of explainability of AI-based predictions, especially relative to those of human expert counterparts. In this work, we develop CNN architectures that demonstrate robust detection of glaucoma in optical coherence tomography (OCT) images and test with concept activation vectors (TCAVs) to infer what image concepts CNNs use to generate predictions. Furthermore, we compare TCAV results to eye fixations of clinicians, to identify common decision-making features used by both AI and human experts. We find that employing fine-tuned transfer learning and CNN ensemble learning create end-to-end deep learning models with superior robustness compared to previously reported hybrid deep-learning/machine-learning models, and TCAV/eye-fixation comparison suggests the importance of three OCT report sub-images that are consistent with areas of interest fixated upon by OCT experts to detect glaucoma. The pipeline described here for evaluating CNN robustness and validating interpretable image concepts used by CNNs with eye movements of experts has the potential to help standardize the acceptance of new AI tools for use in the clinic.

Entities:  

Mesh:

Year:  2021        PMID: 33290209      PMCID: PMC8397372          DOI: 10.1109/TBME.2020.3043215

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.756


  20 in total

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2.  Deep Learning and Glaucoma Specialists: The Relative Importance of Optic Disc Features to Predict Glaucoma Referral in Fundus Photographs.

Authors:  Sonia Phene; R Carter Dunn; Naama Hammel; Yun Liu; Jonathan Krause; Naho Kitade; Mike Schaekermann; Rory Sayres; Derek J Wu; Ashish Bora; Christopher Semturs; Anita Misra; Abigail E Huang; Arielle Spitze; Felipe A Medeiros; April Y Maa; Monica Gandhi; Greg S Corrado; Lily Peng; Dale R Webster
Journal:  Ophthalmology       Date:  2019-09-24       Impact factor: 12.079

3.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

4.  Using eye movements to study visual search and to improve tumor detection.

Authors:  C F Nodine; H L Kundel
Journal:  Radiographics       Date:  1987-11       Impact factor: 5.333

Review 5.  Global prevalence of glaucoma and projections of glaucoma burden through 2040: a systematic review and meta-analysis.

Authors:  Yih-Chung Tham; Xiang Li; Tien Y Wong; Harry A Quigley; Tin Aung; Ching-Yu Cheng
Journal:  Ophthalmology       Date:  2014-06-26       Impact factor: 12.079

6.  Deep learning is effective for the classification of OCT images of normal versus Age-related Macular Degeneration.

Authors:  Cecilia S Lee; Doug M Baughman; Aaron Y Lee
Journal:  Ophthalmol Retina       Date:  2017-02-13

7.  Robust and Interpretable Convolutional Neural Networks to Detect Glaucoma in Optical Coherence Tomography Images.

Authors:  Kaveri A Thakoor; Sharath C Koorathota; Donald C Hood; Paul Sajda
Journal:  IEEE Trans Biomed Eng       Date:  2021-07-19       Impact factor: 4.756

8.  A feature agnostic approach for glaucoma detection in OCT volumes.

Authors:  Stefan Maetschke; Bhavna Antony; Hiroshi Ishikawa; Gadi Wollstein; Joel Schuman; Rahil Garnavi
Journal:  PLoS One       Date:  2019-07-01       Impact factor: 3.240

9.  Ensemble Deep Learning for Diabetic Retinopathy Detection Using Optical Coherence Tomography Angiography.

Authors:  Morgan Heisler; Sonja Karst; Julian Lo; Zaid Mammo; Timothy Yu; Simon Warner; David Maberley; Mirza Faisal Beg; Eduardo V Navajas; Marinko V Sarunic
Journal:  Transl Vis Sci Technol       Date:  2020-04-13       Impact factor: 3.283

10.  Challenges to the Common Clinical Paradigm for Diagnosis of Glaucomatous Damage With OCT and Visual Fields.

Authors:  Donald C Hood; Carlos Gustavo De Moraes
Journal:  Invest Ophthalmol Vis Sci       Date:  2018-02-01       Impact factor: 4.799

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  6 in total

1.  Rationale and Development of an OCT-Based Method for Detection of Glaucomatous Optic Neuropathy.

Authors:  Jeffrey M Liebmann; Donald C Hood; Carlos Gustavo de Moraes; Dana M Blumberg; Noga Harizman; Yocheved S Kresch; Emmanouil Tsamis; George A Cioffi
Journal:  J Glaucoma       Date:  2022-02-28       Impact factor: 2.290

2.  Robust and Interpretable Convolutional Neural Networks to Detect Glaucoma in Optical Coherence Tomography Images.

Authors:  Kaveri A Thakoor; Sharath C Koorathota; Donald C Hood; Paul Sajda
Journal:  IEEE Trans Biomed Eng       Date:  2021-07-19       Impact factor: 4.756

3.  Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans.

Authors:  Kaveri A Thakoor; Xinhui Li; Emmanouil Tsamis; Zane Z Zemborain; Carlos Gustavo De Moraes; Paul Sajda; Donald C Hood
Journal:  Transl Vis Sci Technol       Date:  2021-04-01       Impact factor: 3.283

4.  Identifying the Retinal Layers Linked to Human Contrast Sensitivity Via Deep Learning.

Authors:  Foroogh Shamsi; Rong Liu; Cynthia Owsley; MiYoung Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2022-02-01       Impact factor: 4.799

5.  The OCT RNFL Probability Map and Artifacts Resembling Glaucomatous Damage.

Authors:  Sol La Bruna; Anvit Rai; Grace Mao; Jennifer Kerr; Heer Amin; Zane Z Zemborain; Ari Leshno; Emmanouil Tsamis; Carlos Gustavo De Moraes; Donald C Hood
Journal:  Transl Vis Sci Technol       Date:  2022-03-02       Impact factor: 3.283

6.  Validating Automatic Concept-Based Explanations for AI-Based Digital Histopathology.

Authors:  Daniel Sauter; Georg Lodde; Felix Nensa; Dirk Schadendorf; Elisabeth Livingstone; Markus Kukuk
Journal:  Sensors (Basel)       Date:  2022-07-18       Impact factor: 3.847

  6 in total

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