| Literature DB >> 33281598 |
Huize Pang1, Ziyang Yu2, Renyuan Li3,4, Huaguang Yang1, Guoguang Fan1.
Abstract
OBJECTIVES: To investigate the value of MRI-based radiomic model based on the radiomic features of different basal nuclei in differentiating idiopathic Parkinson's disease (IPD) from Parkinsonian variants of multiple system atrophy (MSA-P).Entities:
Keywords: idiopathic Parkinson’s disease; multiple system atrophy; radiomics; support vector machine; susceptibility weighted imaging
Year: 2020 PMID: 33281598 PMCID: PMC7689200 DOI: 10.3389/fnagi.2020.587250
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
FIGURE 1Workflow of radiomic analysis. (1) Regions of the CN (yellow), PUT (green), GP (purple), SN (blue), RN (red), and STN (light blue) were segmented slice by slice to generate volumes of interest (VOIs) in IPD and MSA-P patients. (2) Six kinds of radiomic features were extracted via AK software. (3) A combined feature-selection procedure was applied in the training cohort, which contained t tests, least absolute shrinkage and selection operator (LASSO), and Spearman correlation analysis. (4) The SVM classifier was constructed by ten-fold cross validation with 10 repetition in the training cohort, and the final diagnostic performance was evaluated in both training and testing cohorts.
Demographic characteristics of IPD and MSA-P patients in the training and testing cohorts.
| Characteristics (mean ± SD) | Training cohort | Testing cohort | ||||
| IPD ( | MSA-P ( | IPD ( | MSA-P ( | |||
| Age (y) | 62.00 ± 7.55 | 64.44 ± 8.07 | 0.080 | 64.16 ± 6.52 | 62.48 ± 7.97 | 0.391 |
| Gender (male/female) | 28/30 | 37/34 | 0.665 | 12/13 | 15/16 | 0.977 |
| Disease duration | 4.42 ± 2.09 | 3.86 ± 1.91 | 0.116 | 4.46 ± 2.03 | 3.92 ± 1.82 | 0.304 |
| UPDISIII score | 37.66 ± 10.98 | 42.07 ± 13.33 | 0.041* | 37.12 ± 9.14 | 41.74 ± 11.38 | 0.098 |
| MoCA | 22.60 ± 3.97 | 22.46 ± 4.37 | 0.851 | 21.03 ± 4.10 | 21.80 ± 4.17 | 0.494 |
SVM classifier performance of each basal nucleus and the combined model in the training and testing cohorts.
| Basal nucleus | Training cohort | Testing cohort | ||||||||
| Balanced-ACC | Sen (95%CI) | Spec (95%CI) | AUC (95%CI) | Balanced-ACC | Sen (95%CI) | Spec (95%CI) | AUC (95%CI) | |||
| RN | 0.595 | 0.512 (0.477, 0.551) | 0.677 (0.634, 0.712) | 0.610 (0.579, 0.641) | <0.01** | 0.572 | 0.503 (0.446, 0.560) | 0.640 (0.577, 0.700) | 0.592 (0.545, 0.639) | <0.01** |
| SN | 0.732 | 0.742 (0.708, 0.774) | 0.721 (0.682, 0.757) | 0.785 (0.759, 0.810) | <0.05* | 0.702 | 0.707 (0.652, 0.757) | 0.696 (0.635, 0.752) | 0.719 (0.676, 0.761) | <0.01** |
| PUT | 0.810 | 0.818 (0.788, 0.846) | 0.802 (0.767, 0.833) | 0.867 (0.847, 0.886) | <0.001*** | 0.791 | 0.842 (0.797, 0.881) | 0.740 (0.681, 0.793) | 0.862 (0.832, 0.892) | <0.001*** |
| GP | 0.731 | 0.690 (0.655, 0.724) | 0.772 (0.736, 0.806) | 0.788 (0.764, 0.812) | <0.001*** | 0.695 | 0.745 (0.693, 0.793) | 0.644 (0.581, 0.703) | 0.766 (0.727, 0.805) | <0.01** |
| CN | 0.664 | 0.689 (0.653, 0.723) | 0.638 (0.600, 0.677) | 0.662 (0.631, 0.693) | <0.001*** | 0.626 | 0.645 (0.590, 0.698) | 0.606 (0.540, 0.665) | 0.615 (0.568, 0.662) | <0.01** |
| STN | 0.636 | 0.718 (0.684, 0.751) | 0.553 (0.512, 0.594) | 0.649 (0.618, 0.679) | <0.01** | 0.581 | 0.710 (0.656, 0.760) | 0.452 (0.389, 0.516) | 0.583 (0.535, 0.630) | <0.01** |
| PUT + | 0.836 | 0.814 (0.784, 0.842) | 0.857 (0.826, 0.884) | 0.880 (0.861, 0.898) | <0.001*** | 0.809 | 0.813 (0.765, 0.855) | 0.804 (0.749, 0.851) | 0.878 (0.849, 0.906) | <0.001*** |
FIGURE 2Receiver-operating characteristic (ROC) curves of the SVM model in the training cohort.
FIGURE 3Receiver-operating characteristic (ROC) curves of the SVM model in the testing cohort.
Statistical analysis of the selected radiomic features derived from the putamen.
| Feature type-feature name | IPD | MSA-P | Stat/adjusted |
| Histogram feature-Std Deviance | 26.512 ± 5.337 | 34.949 ± 11.898 | −5.001/<0.001*** |
| Textural feature-Correlation_angle0_offset1 | 1.206E- 3 ± 7.177E-4 | 9.030E-4 ± 4.873E-4 | 2.849/<0.01** |
| GLCM feature-GLCMEntropv_AllDirection_offset7_SD | 0.400 ± 0.353 | 0.769 ± 0.873 | −3.026/<0.01** |
| GLCM feature-HaralickCorrelation_Alldirection_offset4 | 4.604E9 ± 2.821E9 | 1.829E9 ± 2.012E9 | 6.508/<0.001*** |
| GLCM feature-InverseDifferenceMoment_angle0_offset7 | 0.045 ± 0.023 | 0.033 ± 0.017 | 3.377/<0.001*** |
| GLCM feature-InverseDifferenceMoment_anglel35_offset7 | 0.043 ± 0.016 | 0.030 ± 0.016 | 4.552/<0.001*** |
| GLRLM feature-RunLengtliNonuniformity_AllDirection_offset 4_SD | 309.990 ± 120.300 | 400.501 ± 129.660 | −4.073/<0.001*** |